CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g39830

Gene name L-ascorbate oxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At4g39830 830142 L-ascorbate oxidase, putative F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA S.X. H.G.
0.62 77.3 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
0.61 76.7 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO S.X. H.G.
0.61 76.7 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.57 73.8 At1g01560 839523 ATMPK11 member of MAP Kinase S.X. H.G.
0.56 73.0 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.56 73.0 At5g39670 833963 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.54 69.5 At5g48540 834910 33 kDa secretory protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.54 69.5 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. S.X. H.G.
0.54 69.5 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
137.3 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
90.5 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
85.5 99.9 E-MEXP-807-raw-cel-1173273116
84.0 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
79.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.4 99.9 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
79.3 99.9 E-MEXP-807-raw-cel-1173273060
78.0 99.9 E-MEXP-807-raw-cel-1173273170
73.5 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
59.8 99.8 E-MEXP-807-raw-cel-1173273252
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-3 46 At5g21105 832235 L-ascorbate oxidase/ copper ion binding / oxidoreductase F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOA C.G. S.X.
0.01 9e-1 36 At4g00490 827959 BAM2 (BETA-AMYLASE 2) Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype. C.G. S.X.
0.01 9e-1 36 At4g26130 828719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF C.G. S.X.
0.01 9e-1 36 At1g20060 838594 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV C.G. S.X.
0.01 3e+0 34 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.03 3e+0 34 At5g21100 832234 L-ascorbate oxidase, putative F:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOA C.G. S.X.
0.01 3e+0 34 At5g20540 832176 ATBRXL4 (BREVIS RADIX-LIKE 4) Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. C.G. S.X.
0.01 3e+0 34 At5g49730 835036 ATFRO6 (FERRIC REDUCTION OXIDASE 6) Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. C.G. S.X.
0.01 3e+0 34 At5g49740 835037 ATFRO7 (FERRIC REDUCTION OXIDASE 7) Encodes a chloroplast ferric chelate reductase. Shows differential splicing and has three different mRNA products. Expressed in the shoot, flower and cotyledon. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 5e-3 44 Glycine max Gma.8447.1.S1_at AB083032.1 syringolide-induced protein B13-1-1 - 4e-3 At4g39830 L-ascorbate oxidase, putative C.G. S.X.
0.03 4e-1 36 Hordeum vulgare Contig16758_at Contig16758 - - 5e-1 At4g39830 L-ascorbate oxidase, putative C.G. S.X.
0.01 7e+0 34 Oryza sativa OsAffx.23163.1.A1_at - - - 0 C.G. S.X.
0.12 2e-2 42 Populus trichocarpa Ptp.3277.1.S1_at DN498720 hypothetical protein - 1e-2 At4g39830 L-ascorbate oxidase, putative C.G. S.X.
0.03 4e-3 44 Triticum aestivum Ta.27566.1.S1_at BT008984.1 - - 2e-8 At5g21105 L-ascorbate oxidase/ copper ion binding / oxidoreductase C.G. S.X.
0.03 7e-8 57 Vitis vinifera 1607223_at BQ796376 hypothetical protein LOC100251280 - 4e-14 At5g21105 L-ascorbate oxidase/ copper ion binding / oxidoreductase C.G. S.X.
0.01 6e+0 32 Zea mays Zm.7385.1.A1_at CF626198 - - 7e+0 At5g19473 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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