CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g39720

Gene name VQ motif-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.34 39.8 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF S.X. H.G.
0.40 50.8 At2g44990 819107 CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7) More Axillary Branching; carotenoid cleavage dioxygenases. S.X. H.G.
0.33 38.1 At1g20700 838660 WOX14 (WUSCHEL RELATED HOMEOBOX 14) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. S.X. H.G.
0.33 38.1 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV S.X. H.G.
0.32 35.7 At1g33440 840237 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF S.X. H.G.
0.32 35.7 At5g38280 833810 PR5K putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase S.X. H.G.
0.19 12.7 At5g56460 835747 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
267.1 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
137.8 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
129.8 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
112.2 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.3 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
92.2 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
91.4 99.9 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
90.6 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
86.9 99.9 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
78.2 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 5e-16 85 At5g65170 836641 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.07 5e-4 46 At1g35830 840485 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVB C.G. S.X.
0.02 7e-3 42 At5g07340 830625 calnexin, putative F:unfolded protein binding, calcium ion binding;P:protein folding;C:endoplasmic reticulum, plasma membrane, chloroplast, membrane;MOPFBV C.G. S.X.
0.03 7e-3 42 At5g02270 831709 ATNAP9 member of NAP subfamily C.G. S.X.
0.03 3e-2 40 At5g14690 831321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVM C.G. S.X.
0.03 3e-2 40 At4g39260 830082 GR-RBP8 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). C.G. S.X.
0.02 3e-2 40 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA C.G. S.X.
0.01 1e-1 38 At5g13760 831221 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFVBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max PsAffx.C7000153_at PsAffx.C7000153 - - 4e-3 At2g35960 NHL12 C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HM08L19r_at HM08L19r - - 3e-2 At3g09980 unknown protein C.G. S.X.
0.04 1e-2 42 Oryza sativa OsAffx.29056.1.S1_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.69742.1.A1_at CV244804 - - 6e-2 At5g24580 copper-binding family protein C.G. S.X.
0.04 3e-2 40 Triticum aestivum TaAffx.57097.1.S1_at CA636743 - - 1e-2 At5g45870 Bet v I allergen family protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1620100_at CF413860 hypothetical protein LOC100241687 - 7e-2 At1g60815 RALFL7 (RALF-LIKE 7) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.16508.3.A1_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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