Gene omics information

Query gene ID At4g39710
Gene name immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g39710830126immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFAS.X.H.G.
0.7083.5At2g39470818532PPL2 (PsbP-like protein 2)F:calcium ion binding;P:photosynthesis;C:in 6 components;PBOS.X.H.G.
0.5469.5At2g01590814688CRR3 (CHLORORESPIRATORY REDUCTION 3)Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.S.X.H.G.
0.5065.3At5g58260835938-Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.S.X.H.G.
0.4761.2At3g55330824699PPL1 (PsbP-like protein 1)F:calcium ion binding;P:photosynthesis;C:in 6 components;POBS.X.H.G.
0.4659.8At1g14150837974oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;PS.X.H.G.
0.4558.3At1g45474841099LHCA5Encodes a component of the light harvesting complex of photosystem I.S.X.H.G.
0.4457.2At1g70760843413CRR23 ((chlororespiratory reduction 23)a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.S.X.H.G.
0.4355.3At1g32080840100membrane protein, putativeF:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, membrane, chloroplast envelope;BOFPAS.X.H.G.
0.4050.8At1g19150838498LHCA6PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA,S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.499.7GSM131105Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
17.799.5GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
17.199.5GSM183506WT_for_MYB29/76_rep3GSE7570ATR1_like_Clade_OE_and_miR
16.299.5GSM131107Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
14.399.4GSM131108Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
12.199.3GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
12.199.3GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
10.999.2E-TABM-21-raw-cel-529816080
10.399.2GSM131464AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)
10.299.2GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-136At5g09400830799KUP7potassium transporterC.G.S.X.
0.011e+034At5g46450834688disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
0.011e+034At1g48480841269RKL1Arabidopsis thaliana receptor-like protein kinase (RKL1) geneC.G.S.X.
0.031e+034At1g26100839151cytochrome B561 family proteinF:carbon-monoxide oxygenase activity;P:unknown;C:endomembrane system, integral to membrane;MPOFC.G.S.X.
0.021e+034At1g44920841058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAOC.G.S.X.
0.035e+032At5g515453771487LPA2 (low psii accumulation2)Encodes LPA2 (low psii accumulation2), an intrinsic thylakoid membrane protein required for efficient assembly of Photosystem II.C.G.S.X.
0.015e+032At5g14950831347GMII (GOLGI ALPHA-MANNOSIDASE II)Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.C.G.S.X.
0.015e+032At5g24260832493prolyl oligopeptidase family proteinF:serine-type peptidase activity;P:proteolysis;C:membrane;BOMFAPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxHgAffx.13168.1.S1_atCB374814--5e-1At4g39710immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeC.G.S.X.
0.031e+130Hordeum vulgareContig5482_atContig5482--1e+0At4g28750PSAE-1 (PSA E1 KNOCKOUT)C.G.S.X.
0.023e+034Oryza sativaOs04g0347100AU197402-Conserved hypothetical protein7e+0At2g33190F-box family proteinC.G.S.X.
0.098e-1581Populus trichocarpaPtp.6962.1.S1_s_atCV280657hypothetical protein-1e-14At4g39710immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeC.G.S.X.
0.031e+034Triticum aestivumTa.23974.1.S1_atCA722139--2e+0At4g39710immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeC.G.S.X.
0.223e-26117Vitis vinifera1610774_atCD012179hypothetical protein LOC100268058-2e-25At4g39710immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeC.G.S.X.
0.039e+030Zea maysZm.5655.2.A1_a_atAY107995.1hypothetical protein LOC100272896-4e-9At2g14910unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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