CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g39675

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.47 61.2 At1g15380 838107 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA S.X. H.G.
0.31 33.8 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At4g33420 829479 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM S.X. H.G.
0.26 24.4 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO S.X. H.G.
0.23 19.3 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.20 14.4 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM S.X. H.G.
0.19 12.7 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.15 7.8 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. S.X. H.G.
0.14 6.8 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
84.4 99.9 GSM290827 root - 04% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
66.9 99.8 GSM290758 root - 01% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
53.3 99.8 GSM291128 root - 08% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
41.3 99.8 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
38.1 99.8 GSM245474 9 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
37.2 99.7 GSM184553 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.8 99.7 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.6 99.7 GSM184557 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.4 99.7 GSM218592 Whole roots 3.5hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.0 99.7 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 7e-12 69 At2g22122 2745552 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 6e-3 40 At5g45110 834545 NPR3 (NPR1-LIKE PROTEIN 3) Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. C.G. S.X.
0.06 6e-3 40 At2g41470 818745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PMO C.G. S.X.
0.04 3e-2 38 At5g64020 836523 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 3e-2 38 At3g59510 825120 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMBOFAV C.G. S.X.
0.02 3e-2 38 At2g23760 816908 BLH4 (BEL1-LIKE HOMEODOMAIN 4) Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves. C.G. S.X.
0.02 1e-1 36 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-1 34 Glycine max PsAffx.psHA003iE02r_s_at PsAffx.psHA003iE02r - - 7e-5 At4g14465 DNA-binding protein-related C.G. S.X.
0.08 2e-1 34 Hordeum vulgare HM08L19r_at HM08L19r - - 3e-2 At3g09980 unknown protein C.G. S.X.
0.05 8e-1 34 Oryza sativa Os08g0380700 9636.m02903 - - 1e+0 At5g42960 unknown protein C.G. S.X.
0.09 1e-1 36 Populus trichocarpa PtpAffx.205800.1.S1_at pmrna11463 hypothetical protein - 1e-1 At5g42980 ATTRX3 (THIOREDOXIN 3) C.G. S.X.
0.09 4e-1 34 Triticum aestivum Ta.11276.1.A1_at BQ169752 - - 5e-1 At5g46780 VQ motif-containing protein C.G. S.X.
0.06 5e-1 32 Vitis vinifera 1622326_at CF214763 - - 7e-1 At5g01910 unknown protein C.G. S.X.
0.03 2e-1 34 Zea mays Zm.14473.2.A1_at CK347999 hypothetical protein LOC100191612 - 8e-3 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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