Gene omics information

Query gene ID At4g39670
Gene name glycolipid binding / glycolipid transporter
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8894.0At4g39670830121glycolipid binding / glycolipid transporterF:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MPOFS.X.H.G.
0.5570.6At1g04600839480XIA (MYOSIN XI A)member of Myosin-like proteinsS.X.H.G.
0.5469.5At3g19970821535unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOS.X.H.G.
0.5166.3At4g27880828901seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:mitochondrion, nucleus;MPOFS.X.H.G.
0.4963.5At3g08730820020PK1 (PROTEIN-SERINE KINASE 1)Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.S.X.H.G.
0.4963.5At3g55430824709glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOBS.X.H.G.
0.4862.5At3g12620820442protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBVS.X.H.G.
0.4761.2At1g71697843500ATCK1 (CHOLINE KINASE 1)Encodes choline kinase. mRNA levels are increased in response to wounding.S.X.H.G.
0.4659.8At2g07180815287protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.4558.3At3g57480824915zinc finger (C2H2 type, AN1-like) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
81.799.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
77.299.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.066e-652At5g46030834644unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.014e-446At2g24120816946SCA3 (SCABRA 3)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVBC.G.S.X.
0.055e-342At5g55430835636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFVPBAC.G.S.X.
0.025e-342At5g40340834032PWWP domain-containing proteinF:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVAC.G.S.X.
0.035e-342At3g25910822188zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBVC.G.S.X.
0.012e-240At5g07400830631forkhead-associated domain-containing protein / FHA domain-containing proteinF:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPBC.G.S.X.
0.022e-240At5g44280834451RING1A (RING 1A)Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.C.G.S.X.
0.012e-240At4g16630827364DEAD/DEAH box helicase, putative (RH28)F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;MBOFPVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-240Glycine maxGma.12028.1.S1_atAW621058--9e-3At4g39670glycolipid binding / glycolipid transporterC.G.S.X.
0.053e-342Hordeum vulgareContig25984_atContig25984--9e-1At4g24380unknown proteinC.G.S.X.
0.052e-138Oryza sativaOsAffx.2979.1.S1_at---0C.G.S.X.
0.135e-1065Populus trichocarpaPtpAffx.26534.1.S1_atCK095200hypothetical protein-6e-10At4g39670glycolipid binding / glycolipid transporterC.G.S.X.
0.072e-550Triticum aestivumTaAffx.88060.1.S1_atCA624461--7e-9At2g34690ACD11 (ACCELERATED CELL DEATH 11)C.G.S.X.
0.052e-342Vitis vinifera1621823_atCF214240hypothetical protein LOC100253216-4e+0At5g66000unknown proteinC.G.S.X.
0.074e-857Zea maysZm.18228.1.S1_atAY107769.1hypothetical protein LOC100275982-5e-10At2g34690ACD11 (ACCELERATED CELL DEATH 11)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
LGO:0046836The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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