CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g39670

Gene name glycolipid binding / glycolipid transporter

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At4g39670 830121 glycolipid binding / glycolipid transporter F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MPOF S.X. H.G.
0.55 70.6 At1g04600 839480 XIA (MYOSIN XI A) member of Myosin-like proteins S.X. H.G.
0.54 69.5 At3g19970 821535 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO S.X. H.G.
0.51 66.3 At4g27880 828901 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:mitochondrion, nucleus;MPOF S.X. H.G.
0.49 63.5 At3g08730 820020 PK1 (PROTEIN-SERINE KINASE 1) Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues. S.X. H.G.
0.49 63.5 At3g55430 824709 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOB S.X. H.G.
0.48 62.5 At3g12620 820442 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBV S.X. H.G.
0.47 61.2 At1g71697 843500 ATCK1 (CHOLINE KINASE 1) Encodes choline kinase. mRNA levels are increased in response to wounding. S.X. H.G.
0.46 59.8 At2g07180 815287 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.45 58.3 At3g57480 824915 zinc finger (C2H2 type, AN1-like) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
289.0 100.0 E-MEXP-807-raw-cel-1173273252
226.9 100.0 E-MEXP-807-raw-cel-1173273144
177.8 100.0 E-MEXP-807-raw-cel-1173273170
130.0 99.9 E-MEXP-807-raw-cel-1173273223
125.8 99.9 E-MEXP-807-raw-cel-1173273196
110.9 99.9 E-MEXP-807-raw-cel-1173272948
95.0 99.9 E-ATMX-35-raw-cel-1574334800
94.5 99.9 E-ATMX-35-raw-cel-1574334832
81.7 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
77.2 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 6e-6 52 At5g46030 834644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 4e-4 46 At2g24120 816946 SCA3 (SCABRA 3) F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVB C.G. S.X.
0.05 5e-3 42 At5g55430 835636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFVPBA C.G. S.X.
0.02 5e-3 42 At5g40340 834032 PWWP domain-containing protein F:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVA C.G. S.X.
0.03 5e-3 42 At3g25910 822188 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBV C.G. S.X.
0.01 2e-2 40 At5g07400 830631 forkhead-associated domain-containing protein / FHA domain-containing protein F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPB C.G. S.X.
0.02 2e-2 40 At5g44280 834451 RING1A (RING 1A) Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. C.G. S.X.
0.01 2e-2 40 At4g16630 827364 DEAD/DEAH box helicase, putative (RH28) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-2 40 Glycine max Gma.12028.1.S1_at AW621058 - - 9e-3 At4g39670 glycolipid binding / glycolipid transporter C.G. S.X.
0.05 3e-3 42 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.05 2e-1 38 Oryza sativa OsAffx.2979.1.S1_at - - - 0 C.G. S.X.
0.13 5e-10 65 Populus trichocarpa PtpAffx.26534.1.S1_at CK095200 hypothetical protein - 6e-10 At4g39670 glycolipid binding / glycolipid transporter C.G. S.X.
0.07 2e-5 50 Triticum aestivum TaAffx.88060.1.S1_at CA624461 - - 7e-9 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) C.G. S.X.
0.05 2e-3 42 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.07 4e-8 57 Zea mays Zm.18228.1.S1_at AY107769.1 hypothetical protein LOC100275982 - 5e-10 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0046836 The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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