Gene omics information

Query gene ID At4g39640
Gene name GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.8089.8At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.7586.9At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.7184.2At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.6781.6At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.6378.1At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.5368.6At1g28380839735NSL1 (necrotic spotted lesions 1)This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.S.X.H.G.
0.5065.3At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
116.499.9E-MEXP-807-raw-cel-1173273170
102.899.9E-MEXP-807-raw-cel-1173273116
100.699.9E-MEXP-807-raw-cel-1173273060
86.899.9E-MEXP-807-raw-cel-1173273223
67.999.9E-MEXP-807-raw-cel-1173273144
67.499.8E-MEXP-807-raw-cel-1173273252
55.599.8E-NASC-76-raw-cel-1359878951
52.499.8E-MEXP-807-raw-cel-1173273088
47.199.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
45.499.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.850884At4g39650830119GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.C.G.S.X.
0.427e-137488At1g69820843318GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3)F:gamma-glutamyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAC.G.S.X.
0.014e-344At4g29210829042GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism.C.G.S.X.
0.016e-240At5g43010834316RPT4A26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,C.G.S.X.
0.012e-138At3g06380819812ATTLP9 (TUBBY-LIKE PROTEIN 9)Member of TLP familyC.G.S.X.
0.019e-136At5g42030834208ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.019e-136At3g44530823578HIRA (Arabidopsis homolog of histone chaperone HIRA)Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.C.G.S.X.
0.019e-136At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-346Glycine maxGma.14319.2.S1_atBI942916--4e-3At1g69820GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3)C.G.S.X.
0.087e-342Hordeum vulgareContig16483_atContig16483--8e-3At4g39640GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)C.G.S.X.
0.012e+036Oryza sativaOs03g0579900AK108792.1--2e+0At1g56700pyrrolidone-carboxylate peptidase family proteinC.G.S.X.
0.095e-963Populus trichocarpaPtpAffx.205210.1.S1_atpmrna10322hypothetical protein-4e-9At4g39640GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)C.G.S.X.
0.024e+034Triticum aestivumTaAffx.93953.6.S1_atCA671422--1e-9At3g07670SET domain-containing proteinC.G.S.X.
0.023e-136Vitis vinifera1606526_atBQ799338hypothetical protein LOC100244223-4e-3At3g07565DNA bindingC.G.S.X.
0.026e+032Zea maysZm.8625.1.S1_atBM381007Grx_C3 - glutaredoxin subgroup I-1e-1At1g77370glutaredoxin, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006751The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
XGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00430Link to KEGG PATHWAYTaurine and hypotaurine metabolism
00450Link to KEGG PATHWAYSelenoamino acid metabolism
00460Link to KEGG PATHWAYCyanoamino acid metabolism
00480Link to KEGG PATHWAYGlutathione metabolism
00590Link to KEGG PATHWAYArachidonic acid metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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