Gene omics information

Query gene ID At4g39350
Gene name CESA2 (CELLULOSE SYNTHASE A2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g39350830090CESA2 (CELLULOSE SYNTHASE A2)Encodes a cellulose synthase isomer, related to CESA6.S.X.H.G.
0.6075.7At5g05170830399CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.S.X.H.G.
0.5166.3At5g64740836595CESA6 (CELLULOSE SYNTHASE 6)Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles.S.X.H.G.
0.5166.3At3g23820821965GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6)UDP-D-glucuronate 4-epimeraseS.X.H.G.
0.4457.2At1g22540838860proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFS.X.H.G.
0.4355.3At4g32410829376CESA1 (CELLULOSE SYNTHASE 1)Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis.S.X.H.G.
0.3745.0At5g36940833664CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.S.X.H.G.
0.3745.0At2g41770818776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAS.X.H.G.
0.3338.1At1g58440842213XF1Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.S.X.H.G.
0.3133.8At1g78900844228VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.999.6GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
23.799.6GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
22.599.6GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.099.6GSM265422Arabidopsis, root, longitudinal zone 3, standard conditions, rep1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
20.599.6GSM184510Pericycle root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
20.599.6GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
14.899.4GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
14.199.4GSM131203AtGen_D-37_3-BL_REP3_ATH1GSE5617AtGenExpress: Light treatments
14.199.4GSM131173AtGen_D-5_1-BL_REP1_ATH1GSE5617AtGenExpress: Light treatments
13.699.4GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7601235At2g21770816713CESA9 (CELLULOSE SYNTHASE A9)cellulose synthase, related to CESA6.C.G.S.X.
0.633e-113410At5g09870830847CESA5 (CELLULOSE SYNTHASE 5)Encodes a cellulose synthase isomer, related to CESA6.C.G.S.X.
0.649e-98359At5g64740836595CESA6 (CELLULOSE SYNTHASE 6)Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles.C.G.S.X.
0.243e-79297At4g32410829376CESA1 (CELLULOSE SYNTHASE 1)Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis.C.G.S.X.
0.252e-64248At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseC.G.S.X.
0.252e-31139At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.C.G.S.X.
0.221e-1689At5g05170830399CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.C.G.S.X.
0.022e-1585At4g38190829975ATCSLD4encodes a gene similar to cellulose synthaseC.G.S.X.
0.193e-1481At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.223e-58228Glycine maxGmaAffx.78500.1.S1_atBQ134043--9e-57At5g64740CESA6 (CELLULOSE SYNTHASE 6)C.G.S.X.
0.192e-29131Hordeum vulgareContig4451_s_atContig4451--4e-68At4g32410CESA1 (CELLULOSE SYNTHASE 1)C.G.S.X.
0.307e-29131Oryza sativaOs07g0424400AK120236.1-Cellulose synthase-71e-51At2g21770CESA9 (CELLULOSE SYNTHASE A9)C.G.S.X.
0.464e-165583Populus trichocarpaPtp.2712.1.S1_atAY162180.1hypothetical protein-4e-88At5g09870CESA5 (CELLULOSE SYNTHASE 5)C.G.S.X.
0.194e-26121Triticum aestivumTa.6466.1.S1_atBE431148--1e-29At5g09870CESA5 (CELLULOSE SYNTHASE 5)C.G.S.X.
0.115e-1065Vitis vinifera1615577_atCB340193hypothetical protein LOC100256811-4e-92At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)C.G.S.X.
0.241e-36155Zea maysZm.15912.1.S1_atAF200525.1cellulose synthase-1-2e-99At4g32410CESA1 (CELLULOSE SYNTHASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0030244The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
SGO:0009833The chemical reactions and pathways resulting in the formation of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00021Link to KaPPA-View 4Cellulose biosynthesis
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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