CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g39320

Gene name microtubule-associated protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP S.X. H.G.
0.61 76.7 At1g03820 839400 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB S.X. H.G.
0.40 50.8 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.40 50.8 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.22 17.5 At2g35150 818081 EXL1 (EXORDIUM LIKE 1) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
738.7 100.0 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
444.6 100.0 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
283.3 100.0 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
140.8 99.9 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
139.4 99.9 E-MEXP-265-raw-cel-414617695
131.3 99.9 GSM134202 Murray_3-1_D1-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
120.6 99.9 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
84.7 99.9 GSM131660 ATGE_28_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
84.4 99.9 GSM131658 ATGE_28_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
83.3 99.9 GSM131659 ATGE_28_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 40 At2g31910 817749 ATCHX21 (CATION/H+ EXCHANGER 21) member of Putative Na+/H+ antiporter family C.G. S.X.
0.03 2e-1 36 At4g35550 829707 WOX13 (WUSCHEL-RELATED HOMEOBOX 13) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. C.G. S.X.
0.04 2e-1 36 At4g19200 827660 proline-rich family protein F:unknown;P:unknown;C:unknown;MBPFOVA C.G. S.X.
0.01 2e-1 36 At3g46790 823832 CRR2 (CHLORORESPIRATORY REDUCTION 2) Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation. C.G. S.X.
0.01 2e-1 36 At2g04620 815004 cation efflux family protein F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;OBMFPAV C.G. S.X.
0.02 2e-1 36 At1g53500 841785 MUM4 (MUCILAGE-MODIFIED 4) encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development. C.G. S.X.
0.03 1e+0 34 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF C.G. S.X.
0.02 1e+0 34 At5g09550 830814 RAB GDP-dissociation inhibitor F:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Glycine max PsAffx.psZG004xF17f_at PsAffx.psZG004xF17f - - 6e-1 At5g64800 CLE21 (CLAVATA3/ESR-RELATED 21) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig20160_at Contig20160 - - 8e-2 At3g59740 receptor lectin kinase 3 (lecRK3) C.G. S.X.
0.05 2e+0 34 Oryza sativa Os07g0606366 9635.m04157 - - 7e-1 At4g39320 microtubule-associated protein-related C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.220183.1.S1_at pmrna36538 hypothetical protein - 4e+0 At5g24510 60s acidic ribosomal protein P1, putative C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.85900.1.S1_at CA618602 - - 3e-1 At1g31750 proline-rich family protein C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1617408_at CB003255 - - 9e-8 At4g12830 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.8677.1.A1_at CO531412 structural constituent of ribosome - 2e-1 At3g26147 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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