Gene omics information

Query gene ID At4g38920
Gene name ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At4g38920830047ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPAS.X.H.G.
0.8089.8At4g32530829388vacuolar ATP synthase, putative / V-ATPase, putativeF:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBAS.X.H.G.
0.7586.9At2g16510816150vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)F:ATPase activity;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MOFBPAS.X.H.G.
0.6781.6At1g12840837840DET3 (DE-ETIOLATED 3)Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.S.X.H.G.
0.6075.7At3g24160822002PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)Encodes a putative Type 1 membrane protein (PMP).S.X.H.G.
0.5065.3At3g13410820541unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.499.2GSM133984Birnbaum_1-14_StageIII-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
8.399.0GSM133985Birnbaum_1-15_StageIII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
6.898.7GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
6.898.7GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
6.198.5GSM133983Birnbaum_1-13_StageIII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
5.898.4GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
5.598.3GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.598.3GSM133981Birnbaum_1-11_StageII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
5.498.3E-MEXP-1784-raw-cel-1661572930
5.498.3E-MEXP-1784-raw-cel-1661572888
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.871e-135482At4g34720829624AVA-P1vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)C.G.S.X.
0.851e-111402At2g16510816150vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)F:ATPase activity;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MOFBPAC.G.S.X.
0.813e-87321At1g19910838579AVA-P2vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)C.G.S.X.
0.804e-83307At1g75630843898AVA-P4vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA,C.G.S.X.
0.032e-136At3g18850821418LPAT5F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.596e-83307Glycine maxGmaAffx.92173.1.S1_s_atCF807898--6e-86At4g34720AVA-P1C.G.S.X.
0.554e-63240Hordeum vulgareContig2159_atContig2159--7e-68At1g75630AVA-P4C.G.S.X.
0.521e-29131Oryza sativaOs02g0550100AK099459.1-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment)1e-29At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)C.G.S.X.
0.634e-81301Populus trichocarpaPtpAffx.5430.3.S1_a_atCV242643hypothetical protein-1e-112At1g19910AVA-P2C.G.S.X.
0.712e-60232Triticum aestivumTaAffx.85981.4.S1_atCA626243--2e-60At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)C.G.S.X.
0.582e-70264Vitis vinifera1606789_atCF415022similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)-7e-83At4g34720AVA-P1C.G.S.X.
0.479e-67252Zea maysZm.1067.2.A1_atCF626025vacuolar ATP synthase 16 kDa proteolipid subunit-2e-56At1g75630AVA-P4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0015986The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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