CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g38690

Gene name 1-phosphatidylinositol phosphodiesterase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g38690 830025 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPO S.X. H.G.
0.30 32.1 At1g22740 838880 RABG3B GTP-binding protein Rab7 S.X. H.G.
0.28 30.3 At5g57780 835886 - F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.25 22.6 At2g06850 815247 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) endoxyloglucan transferase (EXGT-A1) gene S.X. H.G.
0.20 14.4 At4g12690 826881 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.18 11.4 At3g23050 821879 IAA7 (INDOLE-3-ACETIC ACID 7) Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. S.X. H.G.
0.15 7.8 At3g05900 819759 neurofilament protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.14 6.8 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. S.X. H.G.
0.13 5.8 At1g69160 843247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV S.X. H.G.
0.13 5.8 At5g44020 834425 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:chloroplast, vacuole, membrane;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.5 99.7 E-MEXP-1304-raw-cel-1530619734
28.3 99.7 GSM131187 AtGen_D-20_2-RL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
27.5 99.7 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
27.5 99.7 E-MEXP-1299-raw-cel-1519903848
26.2 99.7 GSM131204 AtGen_D-38_3-AL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
24.8 99.6 GSM131172 AtGen_D-4_1-RL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
24.5 99.6 GSM292081 pif1-2, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
23.2 99.6 E-MEXP-1299-raw-cel-1519903415
22.7 99.6 GSM292079 pif1-2, dark sample, biological rep1 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
21.7 99.6 GSM131186 AtGen_D-19_2-PL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 9e-15 81 At4g34930 829645 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:unknown;BMFPO C.G. S.X.
0.21 3e-14 79 At4g34920 829644 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:triglyceride biosynthetic process, intracellular signaling cascade, lipid metabolic process, phospholipid biosynthetic process;C:cellular_component unknown;BMFPO C.G. S.X.
0.02 2e+0 34 At5g08330 830730 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB C.G. S.X.
0.01 2e+0 34 At3g11670 820339 DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1) Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE). C.G. S.X.
0.01 2e+0 34 At1g04840 839402 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 7e+0 32 At5g64190 836540 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 7e+0 32 At5g43745 834395 phosphotransferase-related F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB C.G. S.X.
0.01 7e+0 32 At5g46570 834700 BSK2 (BR-SIGNALING KINASE 2) Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. C.G. S.X.
0.01 7e+0 32 At5g62370 836358 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-5 50 Glycine max Gma.4279.1.S1_at CA935007 - - 5e-5 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.03 2e-5 50 Hordeum vulgare Contig9890_at Contig9890 - - 8e-1 At4g34920 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.07 2e-8 61 Oryza sativa Os09g0535900 AK061726.1 - Phosphatidylinositol-specific phospholipase C, Xregion domain containing protein 2e-8 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.12 4e-8 59 Populus trichocarpa PtpAffx.39826.1.S1_at CF235440 hypothetical protein - 5e-8 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.04 1e-7 57 Triticum aestivum Ta.25212.1.S1_at CD453992 - - 2e-3 At4g34920 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.17 6e-10 63 Vitis vinifera 1620019_at CB968892 hypothetical protein LOC100258966 - 1e-9 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.10 5e-5 48 Zea mays Zm.13763.1.A1_at CF624710 hypothetical protein LOC100279845 - 2e-4 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
L GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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