Gene omics information

Query gene ID At4g38680
Gene name GRP2 (GLYCINE RICH PROTEIN 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.S.X.H.G.
0.6378.1At4g38660830022thaumatin, putativeF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOVS.X.H.G.
0.5570.6At3g17840821053RLK902Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.S.X.H.G.
0.5267.4At1g68400843169leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.4761.2At3g56370824804leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4457.2At5g51560835230leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.4253.9At1g77630844098peptidoglycan-binding LysM domain-containing proteinF:unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOMFS.X.H.G.
0.3846.7At3g25980822195mitotic spindle checkpoint protein, putative (MAD2)F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOPS.X.H.G.
0.3846.7At3g14240820644subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMS.X.H.G.
0.3846.7At2g05790815130glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.399.6E-MEXP-682-raw-cel-922397594
24.299.6E-MEXP-682-raw-cel-922397662
23.699.6E-MEXP-682-raw-cel-922397577
21.499.6E-MEXP-682-raw-cel-922397645
20.999.6E-MEXP-682-raw-cel-922397611
20.399.6E-MEXP-728-raw-cel-1062074512
20.199.6E-MEXP-682-raw-cel-922397713
20.099.6E-TABM-19-raw-cel-489757236
20.099.6GSM133944Weigel_2-36_CHIP-214_D_Rep3_ATH1GSE5746FRI FLC combos
19.899.6E-TABM-19-raw-cel-489757107
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.601e-46186At2g21060816641ATGRP2B (GLYCINE-RICH PROTEIN 2B)glycine-rich protein (AtGRP2b)C.G.S.X.
0.052e-550At4g31580829285SRZ-22Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.C.G.S.X.
0.118e-548At4g13850827019GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.C.G.S.X.
0.031e-344At3g16350820882myb family transcription factorF:transcription factor activity, DNA binding;P:in 7 processes;C:unknown;PMOBFVC.G.S.X.
0.015e-342At4g32920829429glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;BOMPFVAC.G.S.X.
0.012e-240At4g00060828214MEE44 (maternal effect embryo arrest 44)F:nucleotidyltransferase activity;P:embryonic development ending in seed dormancy;C:unknown;MOFPVC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.225e-1065Glycine maxGmaAffx.65020.1.S1_atAW101190--4e-7At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.122e-446Hordeum vulgareContig409_s_atContig409--3e-4At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.122e-1067Oryza sativaOs08g0129200AK101577.1-Cold shock protein-11e-10At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.074e-446Populus trichocarpaPtpAffx.8675.1.S1_atCK097750hypothetical protein-5e-4At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.143e-756Triticum aestivumTaAffx.128560.1.S1_atCA699137Cold shock domain protein 3-6e-7At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.066e-340Vitis vinifera1619399_s_atCB914618--1e-1At2g30560glycine-rich proteinC.G.S.X.
0.073e-238Zea maysZm.2157.8.S1_atBI096578Hypothetical protein LOC100193584-8e-1At3g66654peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0010228The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
XGO:0032508The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
XGO:0048316The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves.
XGO:0048443The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage