CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g38670

Gene name pathogenesis-related thaumatin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At4g38670 830023 pathogenesis-related thaumatin family protein F:unknown;P:response to other organism;C:unknown;PMFBOV S.X. H.G.
0.60 75.7 At3g59640 825133 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBF S.X. H.G.
0.50 65.3 At5g10910 830958 mraW methylase family protein F:methyltransferase activity;P:unknown;C:unknown;BOMP S.X. H.G.
0.46 59.8 At1g32360 840128 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVA S.X. H.G.
0.40 50.8 At5g19500 832070 tryptophan/tyrosine permease family protein F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF S.X. H.G.
0.31 33.8 At3g28700 822500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
353.8 100.0 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
38.9 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.2 99.7 GSM232887 Wt.3-1.240 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
28.2 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.1 99.7 E-MEXP-432-raw-cel-590864395
23.1 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.4 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1 99.6 GSM232885 Wt.3-1.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
19.2 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.6 99.5 E-MEXP-432-raw-cel-590864409
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 1e-10 67 At1g20030 838592 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV C.G. S.X.
0.08 1e-10 67 At1g75800 843913 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVA C.G. S.X.
0.07 3e-8 59 At2g17860 816296 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV C.G. S.X.
0.04 1e-7 57 At1g77700 844106 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV C.G. S.X.
0.04 4e-7 56 At1g75030 843841 ATLP-3 encodes a PR5-like protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e+0 34 Glycine max GmaAffx.36309.1.S1_at BI470216 - - 2e-16 At1g20030 pathogenesis-related thaumatin family protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare AF016328_at AF016328 - - 7e-2 At1g75050 - C.G. S.X.
0.09 9e-4 46 Oryza sativa Os08g0517800 9636.m04110 - Thaumatin, pathogenesis-related family protein 6e-4 At4g38670 pathogenesis-related thaumatin family protein C.G. S.X.
0.10 2e+0 34 Populus trichocarpa PtpAffx.201603.1.S1_at pmrna3151 hypothetical protein - 3e-14 At1g75800 pathogenesis-related thaumatin family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.51458.1.S1_s_at CA724656 - - 8e-1 At1g55780 metal ion binding C.G. S.X.
0.04 1e-7 56 Vitis vinifera 1612160_at CF415249 hypothetical LOC100261232 - 1e-13 At1g18250 ATLP-1 C.G. S.X.
0.02 7e-1 34 Zea mays Zm.17993.1.A1_at CK827650 hypothetical protein LOC100278316 - 6e+0 At5g44585 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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