CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g38590

Gene name glycosyl hydrolase family 35 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.72 84.8 At4g38590 830016 glycosyl hydrolase family 35 protein putative beta-galactosidase (BGAL14 gene) S.X. H.G.
0.80 89.8 At4g17130 - - - S.X. H.G.
0.74 86.1 At2g26135 2745561 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:membrane;MFOPV S.X. H.G.
0.74 86.1 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB S.X. H.G.
0.72 84.8 At2g31420 817700 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At1g10890 837632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA S.X. H.G.
0.61 76.7 At3g06870 819871 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVB S.X. H.G.
0.61 76.7 At2g24255 816960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At1g49260 841350 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.58 73.8 At5g61090 836230 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
162.6 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
156.4 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
127.7 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
113.4 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
111.1 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
110.0 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
108.9 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.3 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.1 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 8e-58 226 At4g35010 829653 BGAL11 (beta-galactosidase 11) putative beta-galactosidase (BGAL11 gene) C.G. S.X.
0.10 2e-52 208 At4g03430 827925 EMB2770 (EMBRYO DEFECTIVE 2770) Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. C.G. S.X.
0.20 8e-27 123 At2g16730 816174 BGAL13 putative beta-galactosidase (BGAL13 gene) C.G. S.X.
0.02 2e-9 65 At1g45130 841080 BGAL5 (beta-galactosidase 5) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA C.G. S.X.
0.02 1e-7 59 At5g20710 832194 BGAL7 (beta-galactosidase 7) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PMBFOA C.G. S.X.
0.03 3e-5 52 At5g63800 836500 MUM2 (MUCILAGE-MODIFIED 2) Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35 C.G. S.X.
0.03 2e-3 46 At1g77410 844078 BGAL16 (beta-galactosidase 16) F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA C.G. S.X.
0.02 6e-3 44 At3g13750 820584 BGAL1 (Beta galactosidase 1) beta-galactosidase, glycosyl hydrolase family 35 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 38 Glycine max GmaAffx.93194.1.S1_s_at CF808919 - - 8e-1 At5g09805 IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3) C.G. S.X.
0.04 8e-7 56 Hordeum vulgare Contig21148_at Contig21148 - - 3e-5 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.04 1e-5 54 Oryza sativa Os08g0549200 AK069066.1 - Glycoside hydrolase, family 35 protein 2e-5 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.14 2e-10 69 Populus trichocarpa PtpAffx.204306.1.S1_at pmrna8471 hypothetical protein - 2e-20 At4g35010 BGAL11 (beta-galactosidase 11) C.G. S.X.
0.02 3e-2 42 Triticum aestivum TaAffx.59734.1.S1_at CA596456 - - 3e-4 At5g63800 MUM2 (MUCILAGE-MODIFIED 2) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1620664_at CB979614 - - 5e-3 At5g56870 BGAL4 (beta-galactosidase 4) C.G. S.X.
0.01 1e+1 32 Zea mays ZmAffx.668.1.A1_at AI734374 Hypothetical protein LOC100191349 - 5e-8 At5g19980 integral membrane family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0000398 The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00438 Xyloglucan degradation
00440 Rhamnogalacturonan I degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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