Gene omics information

Query gene ID At4g38590
Gene name glycosyl hydrolase family 35 protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7284.8At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)S.X.H.G.
0.8089.8At4g17130---S.X.H.G.
0.7486.1At2g261352745561zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:membrane;MFOPVS.X.H.G.
0.7486.1At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBS.X.H.G.
0.7284.8At2g31420817700DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PS.X.H.G.
0.6378.1At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAS.X.H.G.
0.6176.7At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBS.X.H.G.
0.6176.7At2g24255816960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6075.7At1g49260841350-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5873.8At5g61090836230nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
162.699.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
156.499.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
127.799.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
113.499.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
111.199.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
110.099.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
108.999.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.399.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.199.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.899.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.178e-58226At4g35010829653BGAL11 (beta-galactosidase 11)putative beta-galactosidase (BGAL11 gene)C.G.S.X.
0.102e-52208At4g03430827925EMB2770 (EMBRYO DEFECTIVE 2770)Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.C.G.S.X.
0.208e-27123At2g16730816174BGAL13putative beta-galactosidase (BGAL13 gene)C.G.S.X.
0.022e-965At1g45130841080BGAL5 (beta-galactosidase 5)F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOAC.G.S.X.
0.021e-759At5g20710832194BGAL7 (beta-galactosidase 7)F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PMBFOAC.G.S.X.
0.033e-552At5g63800836500MUM2 (MUCILAGE-MODIFIED 2)Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35C.G.S.X.
0.032e-346At1g77410844078BGAL16 (beta-galactosidase 16)F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOAC.G.S.X.
0.026e-344At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.025e-138Glycine maxGmaAffx.93194.1.S1_s_atCF808919--8e-1At5g09805IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)C.G.S.X.
0.048e-756Hordeum vulgareContig21148_atContig21148--3e-5At4g26140BGAL12 (beta-galactosidase 12)C.G.S.X.
0.041e-554Oryza sativaOs08g0549200AK069066.1-Glycoside hydrolase, family 35 protein2e-5At4g26140BGAL12 (beta-galactosidase 12)C.G.S.X.
0.142e-1069Populus trichocarpaPtpAffx.204306.1.S1_atpmrna8471hypothetical protein-2e-20At4g35010BGAL11 (beta-galactosidase 11)C.G.S.X.
0.023e-242Triticum aestivumTaAffx.59734.1.S1_atCA596456--3e-4At5g63800MUM2 (MUCILAGE-MODIFIED 2)C.G.S.X.
0.011e-138Vitis vinifera1620664_atCB979614--5e-3At5g56870BGAL4 (beta-galactosidase 4)C.G.S.X.
0.011e+132Zea maysZmAffx.668.1.A1_atAI734374Hypothetical protein LOC100191349-5e-8At5g19980integral membrane family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0000398The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
LGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase
00438Link to KaPPA-View 4Xyloglucan degradation
00440Link to KaPPA-View 4Rhamnogalacturonan I degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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