Gene omics information

Query gene ID At4g38560
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2830.3At4g38560830013-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFVS.X.H.G.
0.6781.6At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At4g23610828461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4457.2At1g73800---S.X.H.G.
0.2522.6At2g17040816209anac036 (Arabidopsis NAC domain containing protein 36)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
449.4100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
266.4100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
115.499.9GSM244448Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
100.499.9E-MEXP-807-raw-cel-1173273252
98.299.9GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
95.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
89.899.9E-MEXP-807-raw-cel-1173273144
81.999.9GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
81.599.9E-MEXP-807-raw-cel-1173273060
79.499.9E-MEXP-807-raw-cel-1173273116
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.102e-448At2g20960816630pEARLI4F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAC.G.S.X.
0.022e-138At2g45450819153ZPR1 (LITTLE ZIPPER 1)ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.C.G.S.X.
0.018e-136At5g42830834294transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.018e-136At4g16530827352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.028e-136At3g58300824999unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.028e-136At2g37970818374SOUL-1F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMAC.G.S.X.
0.018e-136At1g04120839277ATMRP5member of MRP subfamilyC.G.S.X.
0.013e+034At5g42010834206WD-40 repeat family proteinF:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxHgAffx.5141.1.S1_atCD748283--6e-1At3g01140MYB106 (myb domain protein 106)C.G.S.X.
0.012e+034Hordeum vulgareContig6801_atContig6801--9e-2At1g65270unknown proteinC.G.S.X.
0.026e+034Oryza sativaOsAffx.9982.1.S1_at---0C.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.222776.1.S1_atpmrna40420hypothetical protein-7e-3At5g67590FRO1 (FROSTBITE1)C.G.S.X.
0.023e+034Triticum aestivumTa.11615.1.A1_atBQ170463--3e+0At5g12450-C.G.S.X.
0.022e-136Vitis vinifera1621316_atCB005059--5e-3At4g23850long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseC.G.S.X.
0.022e+130Zea maysZmAffx.765.1.S1_atAI746076--4e+0At5g11660unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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