Gene omics information

Query gene ID At4g38550
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At1g08930837414ERD6 (EARLY RESPONSE TO DEHYDRATION 6)encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.S.X.H.G.
0.5773.8At1g59870842281PEN3 (PENETRATION 3)ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.S.X.H.G.
0.5065.3At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.5065.3At2g44490819056PEN2 (PENETRATION 2)Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance.S.X.H.G.
0.3032.1At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
34.299.7GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responses
26.899.7GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
24.799.6GSM142849MG001_ATH1_A2-Torres-1N3GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.041e-346At2g20960816630pEARLI4F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAC.G.S.X.
0.016e-240At4g18160827541KCO6Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.C.G.S.X.
0.016e-240At3g51910824354AT-HSFA7Amember of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.012e-138At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionC.G.S.X.
0.022e-138At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGmaAffx.47165.1.A1_atBU550759--4e+0At5g39330unknown proteinC.G.S.X.
0.023e-240Hordeum vulgareContig14913_atContig14913--1e+0At5g38160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.023e-242Oryza sativaOsAffx.12022.1.S1_s_at---0C.G.S.X.
0.022e-242Populus trichocarpaPtpAffx.202938.1.S1_atpmrna5812hypothetical protein-1e-12At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)C.G.S.X.
0.021e+036Triticum aestivumTaAffx.12998.3.S1_atBJ211963--1e+0At5g23420HMGB6C.G.S.X.
0.021e+034Vitis vinifera1621435_s_atCF515294hypothetical protein LOC100253802-2e+0At2g18040PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)C.G.S.X.
0.022e+034Zea maysZmAffx.968.1.S1_atAI833843--2e+0At5g67110ALC (ALCATRAZ)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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