Gene omics information

Query gene ID At4g38440
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g38440830001-F:unknown;P:unknown;C:chloroplast;MFPOBS.X.H.G.
0.5570.6At3g11540820327SPY (SPINDLY)Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.S.X.H.G.
0.5469.5At5g24740832543-F:unknown;P:protein localization;C:unknown;MOFPS.X.H.G.
0.5368.6At4g31160829244DCAF1 (DDB1-CUL4 ASSOCIATED FACTOR 1)Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development.S.X.H.G.
0.5166.3At3g57570824924bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.4963.5At2g41620818760nucleoporin interacting component family proteinF:molecular_function unknown;P:transport;C:nucleolus;MFPOS.X.H.G.
0.4963.5At3g63400825515peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, RNA splicing;C:cellular_component unknown;MOBFPVAS.X.H.G.
0.4862.5At2g41500818748EMB2776Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.S.X.H.G.
0.4761.2At2g29140817463APUM3 (Arabidopsis Pumilio 3)F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPBS.X.H.G.
0.4761.2At5g48120834864bindingF:binding;P:unknown;C:cellular_component unknown;MFOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
141.099.9GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
79.799.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
57.199.8GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
44.399.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
32.699.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.999.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.199.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
24.099.6GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
23.899.6GSM290758root - 01% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-346At3g43610823458tubulin bindingF:tubulin binding;P:microtubule cytoskeleton organization;C:chloroplast, spindle pole, microtubule organizing center;MFPOC.G.S.X.
0.019e-344At4g19550827697transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex;OMPFBVC.G.S.X.
0.019e-344At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOC.G.S.X.
0.019e-344At1g54330841874ANAC020 (Arabidopsis NAC domain containing protein 20)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.014e-242Atcg01100--NADH dehydrogenase ND1C.G.S.X.
0.014e-242At5g27541-C.G.S.X.
0.014e-242At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.C.G.S.X.
0.014e-242At5g20170832140unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFC.G.S.X.
0.014e-242At5g58000835911-F:unknown;P:unknown;C:endoplasmic reticulum, chloroplast;MOPFVBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e-140Glycine maxGmaAffx.49253.1.S1_atBM086167--1e-21At2g40940ERS1 (ETHYLENE RESPONSE SENSOR 1)C.G.S.X.
0.013e-138Hordeum vulgareContig3787_atContig3787--6e+0At3g32160unknown proteinC.G.S.X.
0.017e-242Oryza sativaOs02g0725500AU101104-Plastocyanin-like domain containing protein8e+0At4g00070-C.G.S.X.
0.042e-759Populus trichocarpaPtpAffx.204503.1.S1_atpmrna8837hypothetical protein-2e-7At4g38440-C.G.S.X.
0.014e-242Triticum aestivumTaAffx.106632.2.S1_atCA714660--3e+0At4g10800-C.G.S.X.
0.012e-138Vitis vinifera1621823_atCF214240hypothetical protein LOC100253216-4e+0At5g66000unknown proteinC.G.S.X.
0.011e+036Zea maysZm.8561.2.A1_a_atBM332166hypothetical protein LOC100277438-4e+0At4g05070unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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