CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g38150

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g38150 829971 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POFMAB S.X. H.G.
0.29 30.3 At5g66000 836730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.22 17.5 At3g13150 820503 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMBFVA S.X. H.G.
0.16 8.8 At3g58690 825038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.10 3.4 At5g58370 835949 GTP binding F:GTP binding;P:unknown;C:intracellular;BOFAPM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.3 99.9 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
84.9 99.9 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.2 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.0 99.6 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
21.3 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
17.9 99.5 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.6 99.5 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
15.9 99.5 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
13.0 99.4 GSM131105 Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
13.0 99.4 GSM133319 RIKEN-LI5A GSE5701 AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At3g04050 819560 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA C.G. S.X.
0.01 4e-1 36 At5g26570 832706 ATGWD3 chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position. C.G. S.X.
0.01 4e-1 36 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. C.G. S.X.
0.02 4e-1 36 At1g31817 840071 NFD3 (NUCLEAR FUSION DEFECTIVE 3) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOPMAF C.G. S.X.
0.01 2e+0 34 At5g15810 831438 N2,N2-dimethylguanosine tRNA methyltransferase family protein F:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBP C.G. S.X.
0.03 2e+0 34 At5g46930 834739 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 34 At5g16170 831475 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e+0 34 At4g10060 826597 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.91991.1.S1_at CF807716 - - 1e+0 At1g12020 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare EBes01_SQ002_J08_at EBes01_SQ002_J08 - - 2e-1 At1g68290 ENDO 2 (endonuclease 2) C.G. S.X.
0.14 1e-9 65 Oryza sativa Os01g0546500 AK069340.1 - - 7e-10 At4g38150 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.18 1e-29 131 Populus trichocarpa PtpAffx.56685.1.S1_at CV256101 hypothetical protein - 2e-29 At4g38150 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.15968.1.S1_at CA502597 - - 2e+0 At2g44745 WRKY family transcription factor C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1613577_at CB975267 - - 3e-1 At1g07980 NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.16508.2.A1_at CF018449 60S ribosomal protein L39 /// ribosomal protein L39 - 1e-15 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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