CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g38090

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g38090 829965 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFP S.X. H.G.
0.67 81.6 At1g78890 844226 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.67 81.6 At5g54540 835542 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.33 38.1 At2g21240 816663 BPC4 (BASIC PENTACYSTEINE 4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB S.X. H.G.
0.25 22.6 At4g22750 828372 zinc finger (DHHC type) family protein F:zinc ion binding;P:unknown;C:endomembrane system;MOFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.1 99.4 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.2 99.4 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.8 99.3 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.0 99.2 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.0 99.2 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.9 99.1 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.7 99.1 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
9.7 99.1 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.6 99.1 GSM40553 Total RNA - hypoxia stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
8.3 99.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-2 40 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV C.G. S.X.
0.04 9e-2 38 At2g12461 6240345 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.02 1e+0 34 At5g13500 831194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.02 1e+0 34 At4g00231 826583 MEE50 (maternal effect embryo arrest 50) F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPO C.G. S.X.
0.01 1e+0 34 At3g10980 820269 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.48245.1.S1_at AW186182 - - 6e-1 At4g38090 unknown protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare EBma03_SQ003_P07_at EBma03_SQ003_P07 - - 3e+0 At2g39900 LIM domain-containing protein C.G. S.X.
0.07 2e-4 48 Oryza sativa Os08g0478100 AK063259.1 - Protein of unknown function UPF0029 family protein 2e-4 At4g38090 unknown protein C.G. S.X.
0.41 4e-23 109 Populus trichocarpa PtpAffx.207424.1.S1_at pmrna14733 hypothetical protein - 3e-23 At4g38090 unknown protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.78596.1.S1_at CA730340 - - 1e+0 At5g44520 ribose 5-phosphate isomerase-related C.G. S.X.
0.09 4e-4 44 Vitis vinifera 1619572_at CB002043 hypothetical protein LOC100262901 - 1e-3 At4g38090 unknown protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.10462.1.S1_at CF010422 - - 4e-1 At2g15660 AGL95 (AGAMOUS-LIKE 95) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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