Gene omics information

Query gene ID At4g38080
Gene name hydroxyproline-rich glycoprotein family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At4g38080829964hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFAS.X.H.G.
1.00100.0At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.9396.4At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.8894.0At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBS.X.H.G.
0.8894.0At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.8693.1At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8391.4At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8391.4At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
102.299.9E-MEXP-828-raw-cel-1156922905
93.799.9E-MEXP-828-raw-cel-1156922809
89.499.9E-MEXP-828-raw-cel-1156922944
87.899.9E-MEXP-828-raw-cel-1156922872
81.399.9E-MEXP-828-raw-cel-1156922829
78.099.9E-MEXP-828-raw-cel-1156922968
72.499.9GSM226542L12SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
68.099.9E-MEXP-828-raw-cel-1156922846
63.799.8E-MEXP-828-raw-cel-1156922634
61.899.8E-MEXP-828-raw-cel-1156922923
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.205e-857At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAC.G.S.X.
0.012e-136At5g06940830585leucine-rich repeat family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.017e-134At5g10370830901helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-relatedF:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVAC.G.S.X.
0.027e-134At5g44320834457eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeF:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFPC.G.S.X.
0.017e-134At4g01020826439helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-relatedF:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVAC.G.S.X.
0.027e-134At4g20980827845eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeF:translation initiation factor activity;P:translational initiation;C:chloroplast;MOFPC.G.S.X.
0.037e-134At2g43110818913unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e+034Glycine maxGmaAffx.81061.1.S1_atBI317366--4e-2At3g52070unknown proteinC.G.S.X.
0.034e-134Hordeum vulgareContig14446_atContig14446--4e-1At1g59865unknown proteinC.G.S.X.
0.046e+032Oryza sativaOsAffx.7195.1.S1_at---0C.G.S.X.
0.051e+034Populus trichocarpaPtpAffx.221394.1.S1_atpmrna38266hypothetical protein-7e-1At4g38080hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.043e+032Triticum aestivumTaAffx.111017.1.S1_atCA649694--3e+0At4g38080hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.049e-132Vitis vinifera1613338_atCF405615--1e-18At3g23300dehydration-responsive protein-relatedC.G.S.X.
0.033e-134Zea maysZm.1062.1.A1_atBM080197--1e+0At4g38080hydroxyproline-rich glycoprotein family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage