CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g37970

Gene name CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV S.X. H.G.
0.57 73.8 At2g37900 818366 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF S.X. H.G.
0.55 70.6 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At1g49320 841355 BURP domain-containing protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
384.3 100.0 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
304.3 100.0 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
273.1 100.0 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
212.7 100.0 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
189.6 100.0 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
174.2 100.0 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
166.4 100.0 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
159.6 99.9 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
143.0 99.9 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
112.4 99.9 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 1e-7 57 At4g37980 829954 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to bacterium, plant-type hypersensitive response;C:unknown;BOPFMAV C.G. S.X.
0.12 2e-6 54 At4g37990 829955 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity. C.G. S.X.
0.04 6e-4 46 At1g72680 843600 cinnamyl-alcohol dehydrogenase, putative F:in 6 functions;P:lignin biosynthetic process;C:unknown;BOPFMAV C.G. S.X.
0.04 4e-2 40 At4g39330 830088 CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:apoplast;BOPFMAV C.G. S.X.
0.03 1e-1 38 At2g21730 816710 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.03 1e-1 38 At2g21890 816725 CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.01 5e-1 36 At2g20190 816539 CLASP (CLIP-ASSOCIATED PROTEIN) Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-5 52 Glycine max GmaAffx.84424.1.S1_at AW311543 - - 6e-6 At4g37970 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig19854_s_at Contig19854 - - 2e+0 At2g40085 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.3689.1.S1_at - - - 0 C.G. S.X.
0.12 8e-4 46 Populus trichocarpa PtpAffx.5323.3.S1_at CV274793 cinnamyl alcohol dehydrogenase-like protein - 4e-4 At4g37970 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) C.G. S.X.
0.06 6e-1 36 Triticum aestivum TaAffx.11059.1.A1_s_at CK215277 - - 3e-1 At4g37970 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) C.G. S.X.
0.14 3e-6 52 Vitis vinifera 1616880_at CF209215 hypothetical protein LOC100258571 - 3e-1 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
0.03 9e-1 34 Zea mays Zm.2631.1.S1_at AY107698.1 hypothetical protein LOC100191885 - 5e-5 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009809 The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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