CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g37900

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.09 2.8 At4g37900 829946 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA S.X. H.G.
0.33 38.1 At3g11980 820372 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. S.X. H.G.
0.25 22.6 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.24 20.7 At1g75030 843841 ATLP-3 encodes a PR5-like protein S.X. H.G.
0.22 17.5 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
378.9 100.0 GSM133859 Beynon_1-2-cat-SpikeMix2_Rep1_ATH1 GSE5739 Comparison of CATMA, Affymetrix and Agilent arrays
157.6 99.9 E-MEXP-849-raw-cel-1181980934
156.0 99.9 GSM128732 Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
154.2 99.9 E-MEXP-849-raw-cel-1181980942
136.3 99.9 E-MEXP-849-raw-cel-1181980894
122.5 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
119.7 99.9 E-MEXP-849-raw-cel-1181980958
107.0 99.9 E-MEXP-849-raw-cel-1181980950
97.3 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
92.5 99.9 E-MEXP-849-raw-cel-1181980886
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 4e-59 230 At2g22660 816797 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPBOM C.G. S.X.
0.08 3e-32 141 At4g37682 6240860 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.05 4e-22 107 At1g78030 844138 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 7e-2 40 At4g37780 829934 MYB87 (MYB DOMAIN PROTEIN 87) "encoded by the Myb-like transcription factor MYB87, regulates axillary meristem formation, expressed throughout the plant. Member of the R2R3 factor gene family." C.G. S.X.
0.01 3e-1 38 At3g27785 822399 MYB118 putative transcription factor (MYB118) C.G. S.X.
0.01 3e-1 38 At1g23980 839010 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max GmaAffx.56281.1.S1_at BU761780 - - 3e+0 At5g05590 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig5877_at Contig5877 - - 6e-2 At5g02020 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.3524.1.S1_at - - - 0 C.G. S.X.
0.06 2e-9 65 Populus trichocarpa PtpAffx.212692.1.S1_at pmrna24817 hypothetical protein - 3e-13 At2g22660 - C.G. S.X.
0.01 8e-2 40 Triticum aestivum Ta.10387.3.S1_at BJ267168 - - 3e-1 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1610652_at CF202013.1 - - 1e+0 At5g26667 PYR6 C.G. S.X.
0.01 3e-2 40 Zea mays Zm.17663.1.S1_at CK369409 - - 6e-13 At1g29890 acetyltransferase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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