CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g37640

Gene name ACA2 (CALCIUM ATPASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At4g37640 829918 ACA2 (CALCIUM ATPASE 2) Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. S.X. H.G.
0.38 46.7 At2g32240 817784 - F:molecular_function unknown;P:response to cadmium ion;C:plasma membrane;MOBFPAV S.X. H.G.
0.18 11.4 At5g47730 834824 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative F:transporter activity, binding;P:transport;C:cellular_component unknown;MPFO S.X. H.G.
0.17 10.2 At3g02880 821198 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall;PMOBFVA S.X. H.G.
0.17 10.2 At1g25370 839122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.14 6.8 At1g03370 839519 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.11 4.1 At1g76970 844033 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB S.X. H.G.
0.10 3.4 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.3 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
37.3 99.7 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
31.1 99.7 E-NASC-76-raw-cel-1359879106
26.9 99.7 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
24.4 99.6 GSM131146 AtGen_B-32_3-4-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
23.5 99.6 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
22.1 99.6 E-NASC-76-raw-cel-1359879132
20.8 99.6 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
20.4 99.6 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
19.8 99.6 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 2091 At2g22950 816826 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV C.G. S.X.
0.33 4e-47 190 At1g27770 839670 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. C.G. S.X.
0.18 1e-25 119 At3g57330 824900 ACA11 (autoinhibited Ca2+-ATPase 11) F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:chloroplast, plasma membrane, vacuole;BMOFPAV C.G. S.X.
0.12 8e-24 113 At2g41560 818754 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole. C.G. S.X.
0.03 3e-11 71 At5g57110 835815 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane. C.G. S.X.
0.05 3e-5 52 At3g21180 821671 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. C.G. S.X.
0.04 4e-4 48 At4g29900 829112 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 2e-65 252 Glycine max Gma.1047.1.S1_at AF195028.1 plasma membrane Ca2+-ATPase - 2e-64 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.19 6e-63 242 Hordeum vulgare Contig14714_at Contig14714 P-type ATPase - 3e-68 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.27 3e-74 282 Oryza sativa Os12g0586600 AK100436.1 - Plasma membrane Ca2+-ATPase 2e-59 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.61 4e-82 307 Populus trichocarpa PtpAffx.203064.1.S1_at pmrna6068 autoinhibited calcium ATPase - 3e-82 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.15 2e-34 149 Triticum aestivum TaAffx.50789.1.S1_at CA735312 - - 3e-13 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) C.G. S.X.
0.28 4e-66 252 Vitis vinifera 1613557_at BM436858 - - 4e-66 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.03 1e-5 52 Zea mays Zm.17277.1.S1_at CF273093 - - 1e-45 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage