Gene omics information

Query gene ID At4g37510
Gene name ribonuclease III family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7083.5At4g37510829906ribonuclease III family proteinF:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFPS.X.H.G.
0.8190.4At3g15190820750chloroplast 30S ribosomal protein S20, putativeF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPMS.X.H.G.
0.7888.6At5g14910831343heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PS.X.H.G.
0.7888.6At5g45930834633CHLI2 (MAGNESIUM CHELATASE I2)encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.S.X.H.G.
0.7687.4At2g33800817947ribosomal protein S5 family proteinF:structural constituent of ribosome, RNA binding;P:response to cadmium ion, response to cold, translation;C:in 8 components;BOMAFPS.X.H.G.
0.7586.9At3g52150824379RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBAS.X.H.G.
0.7586.9At5g11450831016oxygen-evolving complex-relatedF:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PBS.X.H.G.
0.7586.9At1g74970843836RPS9 (RIBOSOMAL PROTEIN S9)ribosomal protein S9, nuclear encoded component of the chloroplast ribosomeS.X.H.G.
0.7586.9At3g60370825208immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinEncodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.S.X.H.G.
0.7586.9At5g47190834765ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.998.5GSM131547ATGE_89_BGSE5630AtGenExpress: Developmental series (leaves)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-240At5g66850836819MAPKKK5member of MEKK subfamilyC.G.S.X.
0.025e-240At2g23660816897LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)F:unknown;P:biological_process unknown;C:unknown;PMBOFC.G.S.X.
0.012e-138At4g024052745606unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BAPOC.G.S.X.
0.022e-138At4g20880827836ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)F:unknown;P:unknown;C:nucleus;OMFBPVAC.G.S.X.
0.018e-136At5g07440830635GDH2 (GLUTAMATE DEHYDROGENASE 2)Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.C.G.S.X.
0.018e-136At4g32400829375SHS1 (SODIUM HYPERSENSITIVE 1)Encodes a plastidial nucleotide uniport carrier protein required to export newly synthesized adenylates into the cytosol.C.G.S.X.
0.018e-136At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusC.G.S.X.
0.028e-136At4g00270827164DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:chloroplast;POMC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.154e-1997Glycine maxGma.1367.1.S1_atBQ297577--2e-19At4g37510ribonuclease III family proteinC.G.S.X.
0.115e-1375Hordeum vulgareContig21442_atContig21442--4e-13At4g37510ribonuclease III family proteinC.G.S.X.
0.145e-22107Oryza sativaOs01g0810000AK120752.1-Utp11 family protein2e-1At3g60360EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)C.G.S.X.
0.348e-45182Populus trichocarpaPtpAffx.203053.1.S1_atpmrna6046hypothetical protein-6e-45At4g37510ribonuclease III family proteinC.G.S.X.
0.028e-136Triticum aestivumTaAffx.54176.1.S1_atCA684845--4e+0At5g50200WR3 (WOUND-RESPONSIVE 3)C.G.S.X.
0.192e-32139Vitis vinifera1615191_atBQ794962hypothetical protein LOC100254381-5e-32At4g37510ribonuclease III family proteinC.G.S.X.
0.042e-240Zea maysZm.3504.1.A1_atBM073847chloroplast ribonuclease III domain protein-2e-2At4g37510ribonuclease III family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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