CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g37290

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At4g37290 829883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.60 75.7 At4g14455 827091 ATBET12 Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. S.X. H.G.
0.54 69.5 At4g20000 827745 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.51 66.3 At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO S.X. H.G.
0.51 66.3 At5g41740 834177 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA S.X. H.G.
0.50 65.3 At5g57220 835828 CYP81F2 member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi. S.X. H.G.
0.50 65.3 At4g23810 828481 WRKY53 member of WRKY Transcription Factor; Group III S.X. H.G.
0.50 65.3 At5g14700 831322 cinnamoyl-CoA reductase-related F:binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;POBFMVA S.X. H.G.
0.49 63.5 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.49 63.5 At1g24140 839026 matrixin family protein F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
326.9 100.0 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
208.3 100.0 GSM131395 AtGen_6-7311_UV-Bstress-Shoots-3.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
183.3 100.0 GSM131396 AtGen_6-7312_UV-Bstress-Shoots-3.0h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
145.2 99.9 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
130.2 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
116.4 99.9 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
111.9 99.9 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
107.2 99.9 E-MEXP-711-raw-cel-1563002902
83.0 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
82.2 99.9 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 8e-3 40 At2g23270 816859 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e-1 34 At5g41140 834116 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 2e+0 32 At5g14890 831341 NHL repeat-containing protein F:unknown;P:unknown;C:endomembrane system;BOMPA C.G. S.X.
0.01 2e+0 32 At5g10800 830947 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 2e+0 32 At3g56030 824769 - F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF C.G. S.X.
0.01 2e+0 32 At2g36660 818238 PAB7 (POLY(A) BINDING PROTEIN 7) polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins. C.G. S.X.
0.01 2e+0 32 At1g63300 842636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV C.G. S.X.
0.01 7e+0 30 At5g55780 835672 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFO C.G. S.X.
0.01 7e+0 30 At5g36950 833665 DegP10 (DegP protease 10) Encodes a putative DegP protease. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 34 Glycine max GmaAffx.78400.1.A1_at BI972545 - - 1e+0 At4g37290 unknown protein C.G. S.X.
0.05 2e-1 34 Hordeum vulgare HVSMEn0001F05r2_at HVSMEn0001F05r2 - - 1e+0 At4g37290 unknown protein C.G. S.X.
0.05 4e+0 32 Oryza sativa Os07g0546350 NM_185706.1 - - 3e+0 At4g37290 unknown protein C.G. S.X.
0.06 3e+0 32 Populus trichocarpa PtpAffx.22718.1.S1_at BU809903 - - 4e-2 At5g11070 unknown protein C.G. S.X.
0.06 8e+0 30 Triticum aestivum TaAffx.5149.1.S1_at CA720699 - - 9e+0 At4g37290 unknown protein C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1618486_at CF568886 - - 6e-30 At2g29550 TUB7 C.G. S.X.
0.04 3e+0 30 Zea mays ZmAffx.675.1.S1_at AI734494 - - 3e+0 At4g24700 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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