CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g37210

Gene name tetratricopeptide repeat (TPR)-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.65 79.6 At4g37210 829875 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
0.60 75.7 At5g28740 832986 transcription-coupled DNA repair protein-related F:binding;P:RNA processing;C:intracellular;MFOPBA S.X. H.G.
0.56 73.0 At4g11790 826785 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein F:molecular_function unknown;P:intracellular transport;C:cellular_component unknown;OMBFPVA S.X. H.G.
0.56 73.0 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV S.X. H.G.
0.55 70.6 At1g26370 839179 RNA helicase, putative F:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPA S.X. H.G.
0.54 69.5 At1g18450 838425 ATARP4 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. S.X. H.G.
0.52 67.4 At3g04610 819619 FLK (flowering locus KH domain) F:RNA binding, nucleic acid binding;P:positive regulation of flower development;C:nucleus;MOPFVB S.X. H.G.
0.50 65.3 At1g52380 841668 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein F:molecular_function unknown;P:intracellular transport;C:cytosol, nucleus;MFOPBV S.X. H.G.
0.49 63.5 At5g63110 836431 HDA6 (HISTONE DEACETYLASE 6) RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. S.X. H.G.
0.47 61.2 At4g15900 827272 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.3 99.3 GSM131662 ATGE_29_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.7 99.2 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.6 99.2 GSM131666 ATGE_46_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.6 99.1 GSM131665 ATGE_46_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.6 99.1 GSM131664 ATGE_46_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.4 99.1 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.3 99.1 E-MEXP-728-raw-cel-1062074409
9.2 99.1 GSM131663 ATGE_29_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.1 99.1 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.0 99.1 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-2 42 At3g60340 825205 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:vacuole;MPFO C.G. S.X.
0.03 1e-2 42 At1g68870 843219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
0.01 2e-1 38 At5g14420 831293 RGLG2 (RING domain Ligase2) F:ubiquitin-protein ligase activity;P:N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process;C:plasma membrane;MOPVFB C.G. S.X.
0.02 2e-1 38 At5g12110 831084 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPF C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-15 83 Glycine max GmaAffx.72103.1.S1_at BE805644 - - 1e-15 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.08 1e-7 57 Hordeum vulgare Contig8194_at Contig8194 - - 2e-7 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.06 2e-8 61 Oryza sativa Os07g0122400 AK066848.1 - TPR repeat containing protein 3e-8 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.207319.1.S1_s_at pmrna14508 hypothetical protein - 3e-4 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.04 2e-4 48 Triticum aestivum Ta.17201.1.S1_at CA618760 - - 3e-4 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.08 1e-12 73 Vitis vinifera 1615876_at CF513558 hypothetical protein LOC100248980 - 4e-12 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.06 5e-3 42 Zea mays Zm.7707.1.S1_a_at CK985938 Hypothetical protein LOC100193555 - 1e-2 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage