Gene omics information

Query gene ID At4g37210
Gene name tetratricopeptide repeat (TPR)-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6579.6At4g37210829875tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVAS.X.H.G.
0.6075.7At5g28740832986transcription-coupled DNA repair protein-relatedF:binding;P:RNA processing;C:intracellular;MFOPBAS.X.H.G.
0.5673.0At4g11790826785Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing proteinF:molecular_function unknown;P:intracellular transport;C:cellular_component unknown;OMBFPVAS.X.H.G.
0.5673.0At1g61010842393CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPVS.X.H.G.
0.5570.6At1g26370839179RNA helicase, putativeF:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPAS.X.H.G.
0.5469.5At1g18450838425ATARP4Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.S.X.H.G.
0.5267.4At3g04610819619FLK (flowering locus KH domain)F:RNA binding, nucleic acid binding;P:positive regulation of flower development;C:nucleus;MOPFVBS.X.H.G.
0.5065.3At1g52380841668Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing proteinF:molecular_function unknown;P:intracellular transport;C:cytosol, nucleus;MFOPBVS.X.H.G.
0.4963.5At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.S.X.H.G.
0.4761.2At4g15900827272PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.399.3GSM131662ATGE_29_B2GSE5633AtGenExpress: Developmental series (shoots and stems)
10.799.2GSM131661ATGE_29_A2GSE5633AtGenExpress: Developmental series (shoots and stems)
10.699.2GSM131666ATGE_46_CGSE5633AtGenExpress: Developmental series (shoots and stems)
9.699.1GSM131665ATGE_46_BGSE5633AtGenExpress: Developmental series (shoots and stems)
9.699.1GSM131664ATGE_46_AGSE5633AtGenExpress: Developmental series (shoots and stems)
9.499.1GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
9.299.1GSM131663ATGE_29_C2GSE5633AtGenExpress: Developmental series (shoots and stems)
9.199.1GSM131674ATGE_49_BGSE5633AtGenExpress: Developmental series (shoots and stems)
9.099.1GSM142906WW002_ATH1_A2-willa-ISOX-REP2GSE6181Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At3g60340825205palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:vacuole;MPFOC.G.S.X.
0.031e-242At1g68870843219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAC.G.S.X.
0.012e-138At5g14420831293RGLG2 (RING domain Ligase2)F:ubiquitin-protein ligase activity;P:N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process;C:plasma membrane;MOPVFBC.G.S.X.
0.022e-138At5g12110831084elongation factor 1B alpha-subunit 1 (eEF1Balpha1)F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPFC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.065e-1583Glycine maxGmaAffx.72103.1.S1_atBE805644--1e-15At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.081e-757Hordeum vulgareContig8194_atContig8194--2e-7At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.062e-861Oryza sativaOs07g0122400AK066848.1-TPR repeat containing protein3e-8At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.041e-346Populus trichocarpaPtpAffx.207319.1.S1_s_atpmrna14508hypothetical protein-3e-4At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.042e-448Triticum aestivumTa.17201.1.S1_atCA618760--3e-4At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.081e-1273Vitis vinifera1615876_atCF513558hypothetical protein LOC100248980-4e-12At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.065e-342Zea maysZm.7707.1.S1_a_atCK985938Hypothetical protein LOC100193555-1e-2At4g37210tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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