Gene omics information

Query gene ID At4g37170
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4963.5At4g37170829871pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.4253.9At3g23330821914pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.3439.8At5g52850835362pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.3235.7At4g19220827662pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.2830.3At3g14730820701pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.2726.2At1g33350840229pentatricopeptide (PPR) repeat-containing proteinF:binding;P:N-terminal protein myristoylation;C:cellular_component unknown;POMFBAS.X.H.G.
0.2624.4At5g39350833931pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBAS.X.H.G.
0.2624.4At1g74400843781pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.2319.3At3g18970821430pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMS.X.H.G.
0.2014.4At1g74600843800pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
258.9100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
194.4100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
174.3100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
160.699.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
151.799.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
151.699.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
147.399.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
139.199.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
125.599.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.099.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-656At5g16860831549pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.032e-552At3g14330820653pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.022e-552At1g62260842523pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAC.G.S.X.
0.037e-550At2g02980814827pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POFMBAC.G.S.X.
0.023e-448At3g23330821914pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBC.G.S.X.
0.011e-346At1g26900838376pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:mitochondrion;POMFBC.G.S.X.
0.011e-346At1g09680837496pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.014e-344At5g15340831386pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFC.G.S.X.
0.014e-344At4g21300827878pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POFMBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e-344Glycine maxGma.301.2.S1_atAW200959--2e-5At3g13490OVA5 (OVULE ABORTION 5)C.G.S.X.
0.025e-136Hordeum vulgareContig18049_atContig18049--5e-4At4g21065-C.G.S.X.
0.023e-242Oryza sativaOsAffx.23934.1.S1_at---0C.G.S.X.
0.036e-344Populus trichocarpaPtpAffx.211418.1.S1_atpmrna22375hypothetical protein-5e-9At3g49710pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e-138Triticum aestivumTa.26065.1.S1_atCD452381--1e-3At1g47580lipoyltransferase, putativeC.G.S.X.
0.032e-240Vitis vinifera1613525_atBQ800604hypothetical protein LOC100241399-7e-5At4g16835pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.011e-138Zea maysZm.13485.1.A1_atAY108893.1--3e-1At5g16540ZFN3 (ZINC FINGER NUCLEASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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