CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g37010

Gene name caltractin, putative / centrin, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.80 89.8 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA S.X. H.G.
0.75 86.9 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. S.X. H.G.
0.60 75.7 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.60 75.7 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. S.X. H.G.
0.57 73.8 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF S.X. H.G.
0.44 57.2 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.3 99.9 GSM291024 root - 08% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
94.5 99.9 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
84.8 99.9 GSM290758 root - 01% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
82.2 99.9 GSM290828 root - 04% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
74.9 99.9 GSM291124 root - 21% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
48.2 99.8 GSM291098 root - 08% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
46.9 99.8 GSM291101 root - 21% oxygen - 2h - E GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
45.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.6 99.8 GSM157332 Coates_1-4_ara1/2mut_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
39.4 99.8 GSM291023 root - 08% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 3e-7 56 At3g50360 824198 ATCEN2 (CENTRIN2) F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MFPOBV C.G. S.X.
0.01 1e+0 34 At5g45560 834592 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:lipid binding;P:unknown;C:mitochondrion;PMO C.G. S.X.
0.02 1e+0 34 At5g46690 834712 bHLH071 (beta HLH protein 71) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOM C.G. S.X.
0.04 1e+0 34 At4g29658 3770557 PRA1.C (PRENYLATED RAB ACCEPTOR 1.C) F:unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PO C.G. S.X.
0.02 1e+0 34 At4g18905 827625 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAV C.G. S.X.
0.02 1e+0 34 At4g08390 826396 SAPX (STROMAL ASCORBATE PEROXIDASE) Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-4 46 Glycine max GmaAffx.92168.1.S1_s_at CF807893 - - 4e-53 At3g50360 ATCEN2 (CENTRIN2) C.G. S.X.
0.07 5e-4 44 Hordeum vulgare Contig11112_at Contig11112 - - 2e-3 At4g37010 caltractin, putative / centrin, putative C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.28877.1.S1_x_at - - - 0 C.G. S.X.
0.05 3e-1 36 Populus trichocarpa PtpAffx.213693.1.S1_at pmrna26731 hypothetical protein - 1e-1 At4g37010 caltractin, putative / centrin, putative C.G. S.X.
0.10 4e-6 52 Triticum aestivum Ta.4450.1.S1_at BJ266652 - - 9e-6 At4g37010 caltractin, putative / centrin, putative C.G. S.X.
0.05 1e-6 52 Vitis vinifera 1609835_at CB339580 hypothetical protein LOC100247303 - 3e-13 At4g15770 RNA binding / protein binding C.G. S.X.
0.03 7e+0 30 Zea mays Zm.7937.1.A1_at BM080506 plant viral-response family protein - 1e+0 At5g19140 AILP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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