CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g36990

Gene name HSF4 (HEAT SHOCK FACTOR 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g36990 829853 HSF4 (HEAT SHOCK FACTOR 4) encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. S.X. H.G.
0.33 38.1 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.29 30.3 At5g45110 834545 NPR3 (NPR1-LIKE PROTEIN 3) Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. S.X. H.G.
0.14 6.8 At5g22630 832326 ADT5 (arogenate dehydratase 5) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. S.X. H.G.
0.09 2.8 At3g62260 825399 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA S.X. H.G.
0.09 2.8 At2g16720 816173 MYB7 (MYB DOMAIN PROTEIN 7) Encodes a member of MYB3R- and R2R3- type MYB- encoding genes S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
141.8 99.9 E-MEXP-98-raw-cel-320188969
111.7 99.9 E-MEXP-509-raw-cel-829148703
84.4 99.9 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
81.1 99.9 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
79.3 99.9 GSM131454 AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
77.5 99.9 GSM131449 AtGen_6-9221_Heatstress-Roots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
76.2 99.9 E-MEXP-98-raw-cel-320188914
65.7 99.8 GSM131450 AtGen_6-9222_Heatstress-Roots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
47.4 99.8 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
45.7 99.8 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 1e-16 87 At4g11660 826771 AT-HSFB2B member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.13 5e-13 75 At5g62020 836322 AT-HSFB2A member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.08 2e-9 63 At2g26150 817155 ATHSFA2 member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. C.G. S.X.
0.07 1e-7 57 At5g45710 834610 RHA1 (ROOT HANDEDNESS 1) member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.06 1e-7 57 At1g46264 841110 AT-HSFB4 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.03 3e-5 50 At1g67970 843125 AT-HSFA8 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.04 3e-5 50 At1g32330 840125 ATHSFA1D member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.07 4e-4 46 At5g54070 835493 AT-HSFA9 A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-8 61 Glycine max GmaAffx.2051.1.S1_at CA801977 - - 4e-9 At4g36990 HSF4 (HEAT SHOCK FACTOR 4) C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig6968_at Contig6968 - - 8e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.06 1e-2 42 Oryza sativa Os09g0526600 AK106545.1 - Heat shock factor protein 3 (HSF 3) (Heat shocktranscription factor 3) (HSTF 3) 4e-6 At1g46264 AT-HSFB4 C.G. S.X.
0.12 2e-4 48 Populus trichocarpa PtpAffx.210750.1.S1_at pmrna21087 hypothetical protein - 2e-20 At5g62020 AT-HSFB2A C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.95561.1.S1_at CA657041 - - 7e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.04 2e-3 42 Vitis vinifera 1612863_at CB913941 - - 3e-30 At5g16820 HSF3 (HEAT SHOCK FACTOR 3) C.G. S.X.
0.05 2e-1 36 Zea mays Zm.2008.1.A1_at CF623731 hypothetical protein LOC100279662 - 8e-8 At3g02990 ATHSFA1E C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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