Gene omics information

Query gene ID At4g36880
Gene name CP1 (CYSTEINE PROTEINASE1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFS.X.H.G.
0.7586.9At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.S.X.H.G.
0.7586.9At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
0.7184.2At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PS.X.H.G.
0.6781.6At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
0.6781.6At4g21490828234NDB3F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAMS.X.H.G.
0.5368.6At4g39500830104CYP96A11member of CYP96AS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
173.8100.0GSM134304Penfield_1-6_endosperm-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
170.2100.0GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
132.899.9GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
129.799.9GSM109112vte1-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of Arabidopsis
128.799.9GSM134299Penfield_1-1_endosperm-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
112.799.9GSM134306Penfield_1-8_endosperm-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
110.999.9GSM134307Penfield_1-9_endosperm-PAC_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
96.099.9E-MEXP-1607-raw-cel-1620685818
92.399.9GSM109109wild-type(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of Arabidopsis
90.399.9GSM134305Penfield_1-7_endosperm-PAC_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.146e-1375At5g43060834321cysteine proteinase, putative / thiol protease, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:response to salt stress;C:vacuole;MOPVBAFC.G.S.X.
0.103e-963At3g43960823513cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAFC.G.S.X.
0.053e-963At1g20850838677XCP2 (xylem cysteine peptidase 2)F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAFC.G.S.X.
0.064e-859At3g48350823993cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFC.G.S.X.
0.081e-757At1g47128841122RD21 (responsive to dehydration 21)cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21)C.G.S.X.
0.122e-448At3g19400821474cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFC.G.S.X.
0.032e-448At3g19390821473cysteine proteinase, putative / thiol protease, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFC.G.S.X.
0.072e-344At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.131e-861Glycine maxGma.6796.1.S1_atBU545053--1e-8At4g36880CP1 (CYSTEINE PROTEINASE1)C.G.S.X.
0.062e-240Hordeum vulgareContig2556_s_atContig2556--1e-9At5g43060cysteine proteinase, putative / thiol protease, putativeC.G.S.X.
0.031e+036Oryza sativaOsAffx.21049.1.S1_at---0C.G.S.X.
0.103e-963Populus trichocarpaPtpAffx.155350.1.S1_s_atCV282972hypothetical protein-6e-7At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)C.G.S.X.
0.036e-136Triticum aestivumTaAffx.11185.2.A1_atCA630606--3e-1At2g40780RNA binding / translation initiation factorC.G.S.X.
0.087e-444Vitis vinifera1613772_s_atBQ792569hypothetical protein LOC100241957-6e-27At5g43060cysteine proteinase, putative / thiol protease, putativeC.G.S.X.
0.051e-240Zea maysZm.12135.1.A1_atBM334402cysteine protease 1-5e-4At5g43060cysteine proteinase, putative / thiol protease, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010114A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
SGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
CGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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