CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g36490

Gene name SFH12 (SEC14-LIKE 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At4g36490 829801 SFH12 (SEC14-LIKE 12) F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:unknown;MPFO S.X. H.G.
0.89 94.6 At2g23900 816922 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
0.89 94.6 At2g18470 816362 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.86 93.1 At5g20410 832163 MGD2 Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation. S.X. H.G.
0.84 91.9 At1g55560 842005 sks14 (SKU5 Similar 14) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
0.83 91.4 At1g14420 838004 AT59 F:lyase activity, pectate lyase activity;P:plant-type cell wall organization;C:endomembrane system;PBFO S.X. H.G.
0.83 91.4 At3g54800 824645 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;POM S.X. H.G.
0.83 91.4 At5g50830 835155 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.81 90.4 At2g26410 817181 Iqd4 (IQ-domain 4) F:calmodulin binding;P:unknown;C:unknown;PMOBVFA S.X. H.G.
0.81 90.4 At2g13350 815821 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
271.5 100.0 E-ATMX-35-raw-cel-1574334848
164.9 100.0 E-ATMX-35-raw-cel-1574334864
150.3 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
145.1 99.9 E-ATMX-35-raw-cel-1574334880
130.3 99.9 E-MEXP-1138-raw-cel-1432773034
125.4 99.9 E-MEXP-1138-raw-cel-1432773066
124.3 99.9 E-MEXP-1138-raw-cel-1432773098
124.1 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
119.3 99.9 E-MEXP-1138-raw-cel-1432773322
119.3 99.9 E-MEXP-285-raw-cel-440782791
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 0 1080 At2g18180 816331 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.34 2e-63 244 At2g21540 816693 SFH3 (SEC14-LIKE 3) F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFO C.G. S.X.
0.33 2e-32 141 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. C.G. S.X.
0.26 3e-28 127 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
0.22 3e-22 107 At2g21520 816691 transporter F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.15 2e-17 91 At2g16380 816135 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 3e-29 131 Glycine max GmaAffx.89158.1.S1_at CK605958 - - 4e-44 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
0.06 7e-15 81 Hordeum vulgare Contig7871_s_at Contig7871 - - 1e-9 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative C.G. S.X.
0.20 2e-18 95 Oryza sativa Os10g0122600 9638.m00247 - Cellular retinaldehyde-binding/triple function,N-terminal domain containing protein 1e-18 At4g36490 SFH12 (SEC14-LIKE 12) C.G. S.X.
0.41 5e-77 289 Populus trichocarpa PtpAffx.207383.1.S1_at pmrna14642 hypothetical protein - 6e-94 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.08 1e-2 42 Triticum aestivum Ta.27363.1.S1_at BT008962.1 - - 6e-6 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.09 2e-5 50 Vitis vinifera 1612370_at CB974818 hypothetical protein LOC100252199 - 1e-46 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.15 2e-6 54 Zea mays Zm.6096.2.S1_at AJ006545 - - 2e-26 At2g21520 transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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