CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g36070

Gene name CPK18

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At4g36070 829763 CPK18 member of Calcium Dependent Protein Kinase S.X. H.G.
0.18 11.4 At3g19610 821498 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBF S.X. H.G.
0.18 11.4 At3g60020 825172 ASK5 (ARABIDOPSIS SKP1-LIKE 5) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:nucleus;MPOFV S.X. H.G.
0.04 0.9 At3g05720 819741 IMPA-7 (IMPORTIN ALPHA ISOFORM 7) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.04 0.9 At2g17180 816223 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
286.5 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
284.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
284.4 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
276.8 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
247.4 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
245.4 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
234.8 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
225.5 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
214.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
196.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 848 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase C.G. S.X.
0.27 3e-19 97 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase C.G. S.X.
0.03 5e-8 59 At1g76040 843936 CPK29 member of Calcium Dependent Protein Kinase C.G. S.X.
0.03 2e-4 48 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.03 2e-4 48 At3g49370 824099 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-10 67 Glycine max Gma.17453.2.S1_at BU964441 - - 6e-11 At4g36070 CPK18 C.G. S.X.
0.20 2e-21 103 Hordeum vulgare Contig11154_at Contig11154 - - 1e-15 At5g66210 CPK28 C.G. S.X.
0.21 2e-30 135 Oryza sativa Os07g0409900 AF194414.2 - Protein kinase domain containing protein 6e-33 At2g17890 CPK16 C.G. S.X.
0.12 1e-12 75 Populus trichocarpa PtpAffx.146636.1.A1_at CV268823 calcium dependent protein kinase 16 - 9e-15 At5g66210 CPK28 C.G. S.X.
0.14 2e-8 61 Triticum aestivum Ta.5515.2.S1_at BJ279652 calcium-dependent protein kinase - 4e-9 At4g36070 CPK18 C.G. S.X.
0.13 1e-15 83 Vitis vinifera 1608587_at CD799705 hypothetical protein LOC100248850 - 9e-21 At5g66210 CPK28 C.G. S.X.
0.05 2e-6 54 Zea mays Zm.42.1.S1_at D84508.1 CDPK-related protein kinase - 9e-17 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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