CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g36030

Gene name ARO3 (ARMADILLO REPEAT ONLY 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At4g36030 829759 ARO3 (ARMADILLO REPEAT ONLY 3) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. S.X. H.G.
0.67 81.6 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
0.67 81.6 At5g41100 834112 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVA S.X. H.G.
0.60 75.7 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA S.X. H.G.
0.53 68.6 At4g30210 829144 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. S.X. H.G.
0.46 59.8 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.46 59.8 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.1 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
50.5 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
45.9 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
41.9 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.4 99.7 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
30.9 99.7 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
29.4 99.7 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
29.1 99.7 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
28.3 99.7 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 8e-23 109 At4g34940 829646 ARO1 (ARMADILLO REPEAT ONLY 1) Armadillo repeat protein. One of a family of four in Arabidopsis. Located in the nucleus and cytoplasm of pollen vegetative cells, and in the cytoplasm of egg cells. Involved in the signaling network controlling tip growth and actin organization in the pollen tube. C.G. S.X.
0.12 2e-8 61 At5g66200 836752 ARO2 (ARMADILLO REPEAT ONLY 2) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. C.G. S.X.
0.01 3e-1 38 At5g53220 835403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 3e-1 38 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA C.G. S.X.
0.01 3e-1 38 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 36 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA C.G. S.X.
0.01 1e+0 36 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Glycine max PsAffx.C232000017_at PsAffx.C232000017 - - 1e+0 At3g23760 - C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig10333_at Contig10333 - - 4e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-3 46 Oryza sativa Os08g0548500 AK070951.1 - ARM repeat fold domain containing protein 8e-5 At5g66200 ARO2 (ARMADILLO REPEAT ONLY 2) C.G. S.X.
0.11 1e-7 59 Populus trichocarpa PtpAffx.225671.1.S1_at pmrna45187 hypothetical protein - 2e-23 At4g34940 ARO1 (ARMADILLO REPEAT ONLY 1) C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.13702.1.A1_at CD490648 - - 7e+0 At3g02950 - C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1621889_s_at CB340269 - - 1e-1 At1g69325 remorin family protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.3364.1.A1_at AW037134 hypothetical protein LOC100276535 - 4e-1 At1g79770 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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