CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g36010

Gene name pathogenesis-related thaumatin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At4g36010 829757 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV S.X. H.G.
0.22 17.5 At4g18280 827554 glycine-rich cell wall protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.22 17.5 At5g62520 836372 SRO5 (SIMILAR TO RCD ONE 5) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. S.X. H.G.
0.07 1.9 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO S.X. H.G.
0.05 1.1 At5g17850 831653 cation exchanger, putative (CAX8) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
184.1 100.0 E-MEXP-1443-raw-cel-1581869745
174.7 100.0 E-MEXP-1443-raw-cel-1581869803
154.9 99.9 E-MEXP-1725-raw-cel-1669614634
89.7 99.9 E-MEXP-1725-raw-cel-1669614623
84.8 99.9 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
76.7 99.9 E-MEXP-98-raw-cel-320189024
66.6 99.8 GSM131275 AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
65.9 99.8 E-MEXP-98-raw-cel-320188804
61.4 99.8 GSM131272 AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
54.8 99.8 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 3e-36 153 At2g17860 816296 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV C.G. S.X.
0.17 6e-22 105 At1g75800 843913 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVA C.G. S.X.
0.09 5e-13 75 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV C.G. S.X.
0.12 3e-11 69 At1g20030 838592 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV C.G. S.X.
0.12 8e-9 61 At1g75050 843843 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV C.G. S.X.
0.12 5e-7 56 At1g75040 843842 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-4 46 Glycine max GmaAffx.59879.1.S1_at BM520465 - - 2e-9 At1g75030 ATLP-3 C.G. S.X.
0.03 6e-2 38 Hordeum vulgare Contig10686_s_at Contig10686 - - 4e-8 At4g24180 - C.G. S.X.
0.14 2e-8 61 Oryza sativa Os09g0536300 9637.m03081 - Thaumatin, pathogenesis-related family protein 9e-9 At4g36010 pathogenesis-related thaumatin family protein C.G. S.X.
0.10 1e-8 61 Populus trichocarpa PtpAffx.125862.1.A1_at DN493272 - - 8e-9 At4g36010 pathogenesis-related thaumatin family protein C.G. S.X.
0.05 2e-3 44 Triticum aestivum TaAffx.67423.1.S1_at BQ805669 - - 2e-3 At1g75050 - C.G. S.X.
0.08 2e-3 42 Vitis vinifera 1606517_at CB347191 hypothetical protein LOC100247111 - 5e-5 At1g20030 pathogenesis-related thaumatin family protein C.G. S.X.
0.04 5e-2 38 Zea mays Zm.12137.1.S1_at CO524051 thaumatin-like protein 1 - 2e-1 At4g36010 pathogenesis-related thaumatin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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