Gene omics information

Query gene ID At4g35830
Gene name aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.157.8At4g35830829737aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)F:aconitate hydratase activity, 4 iron, 4 sulfur cluster binding;P:response to salt stress;C:mitochondrion, apoplast, plasma membrane, vacuole;OBFMAPS.X.H.G.
0.2930.3At4g23460828445beta-adaptin, putativeF:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MFOPBAS.X.H.G.
0.2726.2At3g16270820873-F:unknown;P:intracellular protein transport;C:membrane;MOPBFS.X.H.G.
0.157.8At5g60410836163SIZ1Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.S.X.H.G.
0.146.8At1g71820843512SEC6F:molecular_function unknown;P:pollen germination, pollen tube growth;C:plasma membrane, exocyst;MFOPBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.799.1GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
7.698.9GSM176878AWP_AL_Txed_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
7.598.8GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
6.998.7GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
6.898.7GSM131160AtGen_C-10_1-Pi-6_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
6.798.7GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
6.598.6GSM133025BC181-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
6.098.5GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
5.798.4GSM74902ice1_no treatment_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
5.698.4GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.625e-136486At2g05710815120aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.C.G.S.X.
0.412e-33145At4g26970828805aconitate hydratase/ copper ion bindingF:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAPC.G.S.X.
0.019e-240At1g725908435913-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinF:oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity;P:lipid metabolic process;C:endomembrane system, integral to membrane, cytoplasm;MOFPBC.G.S.X.
0.013e-138At2g165308161523-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinF:oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity;P:lipid metabolic process;C:endoplasmic reticulum;MOFPBC.G.S.X.
0.013e-138At1g65890842901AAE12 (ACYL ACTIVATING ENZYME 12)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.384e-60234Glycine maxGma.4937.1.S1_x_atAW202374--2e-60At4g35830aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)C.G.S.X.
0.223e-40167Hordeum vulgareContig2866_s_atContig2866--3e-40At4g35830aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)C.G.S.X.
0.532e-72276Oryza sativaOs03g0136900AK067183.1-Aconitate hydratase, cytoplasmic (EC 4.2.1.3)(Citrate hydro-lyase) (Aconitase)1e-72At4g35830aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)C.G.S.X.
0.7301419Populus trichocarpaPtpAffx.225665.1.S1_atpmrna45175hypothetical protein-0At4g35830aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)C.G.S.X.
0.451e-44182Triticum aestivumTa.10193.1.S1_atCK192997--1e-44At4g35830aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)C.G.S.X.
0.324e-35149Vitis vinifera1617606_atCB978918hypothetical protein LOC100253811-7e-57At2g05710aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeC.G.S.X.
0.392e-50200Zea maysZm.16984.1.S1_atCD441220hypothetical protein LOC100216599-2e-111At2g05710aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00150Link to KaPPA-View 4TCA cycle
00152Link to KaPPA-View 4Glyoxylate cycle



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00020Link to KEGG PATHWAYCitrate cycle (TCA cycle)
00630Link to KEGG PATHWAYGlyoxylate and dicarboxylate metabolism
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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