Gene omics information

Query gene ID At4g35800
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At4g35800829734NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.S.X.H.G.
0.6579.6At3g45190823655SIT4 phosphatase-associated family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVS.X.H.G.
0.6478.9At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAS.X.H.G.
0.6075.7At2g39340818519SAC3/GANP family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.5773.8At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.5773.8At3g33530823149transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPFS.X.H.G.
0.5673.0At1g16710838242HAC12 (histone acetyltransferase of the CBP family 12)Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.S.X.H.G.
0.5673.0At4g38600830017KAK (KAKTUS)encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.S.X.H.G.
0.5469.5At1g33980840295Smg-4/UPF3 family proteinInvolved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
51.799.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.499.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
25.899.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-1173At5g60040836126NRPC1Encodes a subunit of RNA polymerase III (aka RNA polymerase C).C.G.S.X.
0.017e-448At3g57660824935NRPA1Encodes a subunit of RNA polymerase I (aka RNA polymerase A).C.G.S.X.
0.012e-140At1g14660838028ATNHX8member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.C.G.S.X.
0.017e-138At3g15460820785brix domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPC.G.S.X.
0.017e-138At2g43650818967EMB2777 (EMBRYO DEFECTIVE 2777)F:molecular_function unknown;P:unknown;C:unknown;MOBFPVAC.G.S.X.
0.017e-138At1g47570841166zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.017e-138At1g60890842381phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPFC.G.S.X.
0.017e-138At1g76130843945AMY2 (ALPHA-AMYLASE-LIKE 2)alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.113e-41173Glycine maxGmaAffx.73949.1.S1_atBG362762--4e-42At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)C.G.S.X.
0.165e-40167Hordeum vulgareContig6412_atContig6412--4e-40At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)C.G.S.X.
0.564e-121438Oryza sativaOsAffx.18625.2.S1_at---0C.G.S.X.
0.7201017Populus trichocarpaPtpAffx.225664.1.S1_atpmrna45174--2e-174At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)C.G.S.X.
0.164e-1895Triticum aestivumTaAffx.128554.1.S1_s_atCD891797--1e-18At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)C.G.S.X.
0.053e-22107Vitis vinifera1611810_atCB981503similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase-1e-22At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)C.G.S.X.
0.338e-116418Zea maysZm.18044.1.S1_atAF519538.1RNA polymerase II largest subunit-2e-123At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
LGO:0006366The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00230Link to KEGG PATHWAYPurine metabolism
00240Link to KEGG PATHWAYPyrimidine metabolism
01100Link to KEGG PATHWAYMetabolic pathways
03020Link to KEGG PATHWAYRNA polymerase
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage