CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35800

Gene name NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At4g35800 829734 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. S.X. H.G.
0.65 79.6 At3g45190 823655 SIT4 phosphatase-associated family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV S.X. H.G.
0.64 78.9 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.60 75.7 At2g39340 818519 SAC3/GANP family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.57 73.8 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.57 73.8 At1g27595 839651 - F:unknown;P:unknown;C:unknown;OMFPB S.X. H.G.
0.57 73.8 At3g33530 823149 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPF S.X. H.G.
0.56 73.0 At1g16710 838242 HAC12 (histone acetyltransferase of the CBP family 12) Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides. S.X. H.G.
0.56 73.0 At4g38600 830017 KAK (KAKTUS) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. S.X. H.G.
0.54 69.5 At1g33980 840295 Smg-4/UPF3 family protein Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.7 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.5 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.4 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.8 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.1 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.8 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.8 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.1 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.1 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-11 73 At5g60040 836126 NRPC1 Encodes a subunit of RNA polymerase III (aka RNA polymerase C). C.G. S.X.
0.01 7e-4 48 At3g57660 824935 NRPA1 Encodes a subunit of RNA polymerase I (aka RNA polymerase A). C.G. S.X.
0.01 2e-1 40 At1g14660 838028 ATNHX8 member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification. C.G. S.X.
0.01 7e-1 38 At3g15460 820785 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 7e-1 38 At2g43650 818967 EMB2777 (EMBRYO DEFECTIVE 2777) F:molecular_function unknown;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 7e-1 38 At1g47570 841166 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV C.G. S.X.
0.01 7e-1 38 At1g60890 842381 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF C.G. S.X.
0.01 7e-1 38 At1g76130 843945 AMY2 (ALPHA-AMYLASE-LIKE 2) alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-41 173 Glycine max GmaAffx.73949.1.S1_at BG362762 - - 4e-42 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) C.G. S.X.
0.16 5e-40 167 Hordeum vulgare Contig6412_at Contig6412 - - 4e-40 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) C.G. S.X.
0.56 4e-121 438 Oryza sativa OsAffx.18625.2.S1_at - - - 0 C.G. S.X.
0.72 0 1017 Populus trichocarpa PtpAffx.225664.1.S1_at pmrna45174 - - 2e-174 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) C.G. S.X.
0.16 4e-18 95 Triticum aestivum TaAffx.128554.1.S1_s_at CD891797 - - 1e-18 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) C.G. S.X.
0.05 3e-22 107 Vitis vinifera 1611810_at CB981503 similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase - 1e-22 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) C.G. S.X.
0.33 8e-116 418 Zea mays Zm.18044.1.S1_at AF519538.1 RNA polymerase II largest subunit - 2e-123 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006350 The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
L GO:0006366 The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00230 Purine metabolism
00240 Pyrimidine metabolism
01100 Metabolic pathways
03020 RNA polymerase
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