CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35720

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO S.X. H.G.
1.00 100.0 At5g44440 834471 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
1.00 100.0 At5g57240 835830 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP S.X. H.G.
0.86 93.1 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) S.X. H.G.
0.86 93.1 At5g54190 835507 PORA light-dependent NADPH:protochlorophyllide oxidoreductase A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
273.5 100.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
253.3 100.0 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
121.7 99.9 E-NASC-78-raw-cel-1463195219
104.8 99.9 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
96.9 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
95.2 99.9 E-NASC-78-raw-cel-1463195235
84.1 99.9 E-NASC-78-raw-cel-1463195267
83.0 99.9 E-MEXP-1304-raw-cel-1530618068
81.2 99.9 E-NASC-78-raw-cel-1463195187
67.7 99.9 E-MEXP-1468-raw-cel-1591138985
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 38 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP C.G. S.X.
0.03 1e-1 38 At4g16140 827300 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA C.G. S.X.
0.01 1e-1 38 At4g13610 826994 MEE57 (maternal effect embryo arrest 57) F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFV C.G. S.X.
0.01 1e-1 38 At2g19110 816428 HMA4 Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport. C.G. S.X.
0.03 1e-1 38 At1g68610 843191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.02 1e-1 38 At1g18590 838440 SOT17 (SULFOTRANSFERASE 17) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. C.G. S.X.
0.02 5e-1 36 At5g57040 835808 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:chloroplast;BPOM C.G. S.X.
0.02 5e-1 36 At5g53140 835395 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;OMBPFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.92123.1.S1_at CF807848 - - 3e-10 At3g08670 unknown protein C.G. S.X.
0.02 9e-1 34 Hordeum vulgare EBro08_SQ006_D12_s_at EBro08_SQ006_D12 - - 9e-1 At4g35720 unknown protein C.G. S.X.
0.02 2e-1 38 Oryza sativa Os12g0507600 AK070613.1 - - 7e-2 At1g27695 glycine-rich protein C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.211477.1.S1_s_at pmrna22499 hypothetical protein - 3e-9 At2g45500 ATP binding / nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.104710.1.S1_at CA746741 - - 4e+0 At3g17460 PHD finger family protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1620439_at CF517122 hypothetical protein LOC100242621 - 1e+0 At5g08320 unknown protein C.G. S.X.
0.02 8e-1 34 Zea mays Zm.8179.1.A1_at CO534834 hypothetical protein LOC100191267 - 1e-8 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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