CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35600

Gene name CONNEXIN 32

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata S.X. H.G.
0.71 84.2 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). S.X. H.G.
0.57 73.8 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. S.X. H.G.
0.53 68.6 At2g37940 818371 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOP S.X. H.G.
0.52 67.4 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF S.X. H.G.
0.46 59.8 At1g08930 837414 ERD6 (EARLY RESPONSE TO DEHYDRATION 6) encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. S.X. H.G.
0.44 57.2 At5g61210 836242 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation S.X. H.G.
0.42 53.9 At5g44070 834430 CAD1 (CADMIUM SENSITIVE 1) Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+. S.X. H.G.
0.40 50.8 At1g22280 838835 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, plasma membrane;PMOBFVA S.X. H.G.
0.35 41.6 At1g18890 838470 ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1) encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
81.4 99.9 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
47.6 99.8 E-MEXP-1443-raw-cel-1581869863
46.7 99.8 E-MEXP-1443-raw-cel-1581869921
39.0 99.8 GSM142844 MG001_ATH1_A25-Torres-8N1 GSE6176 Impact of Type III effectors on plant defense responses
36.3 99.7 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
35.4 99.7 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
33.2 99.7 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
32.6 99.7 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
29.5 99.7 GSM272992 flu over-tAPX 14-2, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
27.8 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 5e-17 89 At1g76360 843968 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.04 7e-10 65 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.03 3e-6 54 At2g02800 814810 APK2B (PROTEIN KINASE 2B) Encodes protein kinase APK2b. C.G. S.X.
0.03 4e-5 50 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. C.G. S.X.
0.04 2e-4 48 At5g02290 831880 NAK Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl. C.G. S.X.
0.02 6e-4 46 At5g55830 835677 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-2 42 Glycine max GmaAffx.56917.1.S1_at AI441130 - - 2e-11 At1g14370 APK2A (PROTEIN KINASE 2A) C.G. S.X.
0.07 8e-5 48 Hordeum vulgare Contig9237_at Contig9237 - - 6e-8 At1g07570 APK1A C.G. S.X.
0.13 1e-3 46 Oryza sativa Os02g0118200 AK111716.1 - Protein kinase 8e-4 At4g35600 CONNEXIN 32 C.G. S.X.
0.10 6e-8 59 Populus trichocarpa PtpAffx.204376.1.S1_at pmrna8597 hypothetical protein - 4e-30 At2g17220 protein kinase, putative C.G. S.X.
0.08 3e-3 44 Triticum aestivum Ta.7718.1.S1_at BE429630 - - 4e-3 At4g35600 CONNEXIN 32 C.G. S.X.
0.04 3e-6 52 Vitis vinifera 1616357_at CF516994 hypothetical protein LOC100255530 - 5e-16 At2g17220 protein kinase, putative C.G. S.X.
0.03 7e-2 38 Zea mays Zm.12080.1.A1_at BM348988 protein kinase APK1A - 1e-18 At2g28930 APK1B C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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