CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35470

Gene name leucine-rich repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g35470 829699 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAV S.X. H.G.
0.58 73.8 At3g02540 821195 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) F:damaged DNA binding;P:protein modification process, proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair;C:nucleus;MBOPFVA S.X. H.G.
0.55 70.6 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA S.X. H.G.
0.50 65.3 At5g47390 834786 myb family transcription factor F:transcription factor activity, DNA binding;P:in 8 processes;C:unknown;POFM S.X. H.G.
0.49 63.5 At5g55910 835689 D6PK (D6 PROTEIN KINASE) D6PK is a protein kinase involved that plays a role in polar auxin transport. Most likely acts redundantly with the related proteins: D6PKL1,D6PKL2,and D6PKL3. PIN1 is a target of D6PK phosphorylation. S.X. H.G.
0.49 63.5 At1g61900 842486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P S.X. H.G.
0.49 63.5 At1g72150 843546 PATL1 (PATELLIN 1) novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes S.X. H.G.
0.47 61.2 At1g22910 838898 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA S.X. H.G.
0.44 57.2 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.44 57.2 At2g20230 816542 - F:unknown;P:unknown;C:plasma membrane, vacuole;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.7 99.8 E-MEXP-1443-raw-cel-1581869515
19.3 99.6 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
19.0 99.5 E-MEXP-1443-raw-cel-1581869573
18.2 99.5 GSM131216 AtGen_D-26_1-FS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
16.7 99.5 GSM134514 Col-0_4day_dark_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
16.5 99.5 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
15.2 99.4 GSM131177 AtGen_D-9_1-DS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
14.6 99.4 GSM131189 AtGen_D-22_2-AL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
13.9 99.4 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
13.7 99.4 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 2e-91 337 At2g17440 816250 leucine-rich repeat family protein F:protein binding;P:unknown;C:plasma membrane;MPBOFVA C.G. S.X.
0.01 2e-1 38 At4g30930 829217 NFD1 (NUCLEAR FUSION DEFECTIVE 1) Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells). C.G. S.X.
0.02 8e-1 36 At5g19480 832068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 8e-1 36 At5g12230 831097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 8e-1 36 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO C.G. S.X.
0.01 8e-1 36 At5g14080 831257 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.01 8e-1 36 At4g37100 829864 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-27 125 Glycine max GmaAffx.46385.2.S1_at CA801989 - - 4e-28 At4g35470 leucine-rich repeat family protein C.G. S.X.
0.05 1e-4 48 Hordeum vulgare Contig11084_at Contig11084 - - 2e-4 At4g35470 leucine-rich repeat family protein C.G. S.X.
0.08 4e-4 48 Oryza sativa Os08g0511700 AK065422.1 - Leucine-rich repeat, typical subtype containingprotein 2e-4 At4g35470 leucine-rich repeat family protein C.G. S.X.
0.29 4e-19 97 Populus trichocarpa PtpAffx.205285.1.S1_at pmrna10476 hypothetical protein - 3e-19 At4g35470 leucine-rich repeat family protein C.G. S.X.
0.04 6e-8 59 Triticum aestivum TaAffx.9110.1.S1_at CA612098 - - 4e+0 At1g55615 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1622292_at CF403386 hypothetical protein LOC100263206 - 1e+0 At5g43380 TOPP6 C.G. S.X.
0.02 6e+0 32 Zea mays ZmAffx.173.1.S1_at AI668250 - - 1e+1 At5g38060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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