CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35380

Gene name guanine nucleotide exchange family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.10 3.4 At4g35380 829691 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA S.X. H.G.
0.30 32.1 At1g68940 843228 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV S.X. H.G.
0.25 22.6 At2g28970 817446 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.25 22.6 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA S.X. H.G.
0.21 15.8 At1g73270 843661 scpl6 (serine carboxypeptidase-like 6) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.3 99.8 E-MEXP-828-raw-cel-1156922634
39.2 99.8 E-MEXP-828-raw-cel-1156922572
38.8 99.8 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.9 99.7 E-MEXP-828-raw-cel-1156922368
32.8 99.7 E-MEXP-828-raw-cel-1156922318
31.4 99.7 E-MEXP-828-raw-cel-1156922613
30.1 99.7 GSM142732 CH001_ATH1_A011-Hampt-c4c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
29.5 99.7 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
28.2 99.7 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.0 99.7 GSM133891 Schroeder_1-3_JS45-control-48h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 6e-75 284 At4g38200 829976 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPB C.G. S.X.
0.05 8e-22 107 At3g60860 825257 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB C.G. S.X.
0.04 4e-5 52 At1g01960 839301 EDA10 (embryo sac development arrest 10) F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:megagametogenesis;C:cytosol, nucleus;MFOPB C.G. S.X.
0.00 2e-1 40 At3g43300 823405 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7) AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. C.G. S.X.
0.01 6e-1 38 At5g39040 833896 ATTAP2 member of TAP subfamily C.G. S.X.
0.01 6e-1 38 At5g45850 834625 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 6e-1 38 At4g35985 829753 senescence/dehydration-associated protein-related F:unknown;P:unknown;C:chloroplast;MPFO C.G. S.X.
0.01 6e-1 38 At2g31880 817746 leucine-rich repeat transmembrane protein kinase, putative Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs. C.G. S.X.
0.01 3e+0 36 At5g23880 832453 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 38 Glycine max GmaAffx.93317.1.S1_at CF809042 Isoflavone reductase homolog 2 (IFR2) - 7e-18 At4g39230 isoflavone reductase, putative C.G. S.X.
0.01 1e+0 36 Hordeum vulgare Contig7894_at Contig7894 - - 7e-1 At2g19800 MIOX2 (MYO-INOSITOL OXYGENASE 2) C.G. S.X.
0.06 1e-19 101 Oryza sativa Os02g0193800 AK108424.1 - ARM repeat fold domain containing protein 6e-1 At2g05117 SCRL9 (SCR-Like 9) C.G. S.X.
0.28 7e-91 337 Populus trichocarpa PtpAffx.222503.1.S1_at pmrna39978 hypothetical protein - 2e-115 At4g38200 guanine nucleotide exchange family protein C.G. S.X.
0.01 7e-1 38 Triticum aestivum Ta.17206.1.S1_at CA618788 - - 4e+0 At5g05220 unknown protein C.G. S.X.
0.08 7e-35 149 Vitis vinifera 1606791_at CF513624 hypothetical protein LOC100250471 - 2e-75 At4g38200 guanine nucleotide exchange family protein C.G. S.X.
0.01 1e+0 36 Zea mays Zm.16996.1.S1_at CF972572 - - 3e-1 At3g24450 copper-binding family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0032012 Any process that modulates the frequency, rate or extent of ARF protein signal transduction.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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