CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35180

Gene name LHT7 (Lys/His transporter 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g35180 829671 LHT7 (Lys/His transporter 7) F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PFMOB S.X. H.G.
0.83 91.4 At3g18220 821350 phosphatidic acid phosphatase family protein / PAP2 family protein F:catalytic activity, phosphatidate phosphatase activity;P:biological_process unknown;C:membrane;MFOBPAV S.X. H.G.
0.83 91.4 At3g56600 824827 inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:unknown;PMOFB S.X. H.G.
0.82 90.9 At5g16540 831516 ZFN3 (ZINC FINGER NUCLEASE 3) Encodes a zinc finger protein. S.X. H.G.
0.82 90.9 At1g52580 841690 ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA S.X. H.G.
0.81 90.4 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase S.X. H.G.
0.81 90.4 At5g64790 836600 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO S.X. H.G.
0.80 89.8 At4g02650 828212 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOPFBAV S.X. H.G.
0.79 89.1 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.79 89.1 At1g44160 841019 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
177.3 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
172.7 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
160.8 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
153.3 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
129.6 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
125.5 99.9 E-MEXP-285-raw-cel-440782791
123.3 99.9 E-MEXP-285-raw-cel-440782725
116.2 99.9 E-ATMX-35-raw-cel-1574334880
108.6 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
87.3 99.9 E-ATMX-35-raw-cel-1574334864
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At2g34930 818058 disease resistance family protein F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV C.G. S.X.
0.01 7e-1 36 At5g44630 834491 terpene synthase/cyclase family protein Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. C.G. S.X.
0.01 7e-1 36 At3g58110 824980 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.01 3e+0 34 At5g01180 831725 PTR5 (PEPTIDE TRANSPORTER 5) Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane. C.G. S.X.
0.01 3e+0 34 At5g65770 836706 LINC4 (LITTLE NUCLEI4) F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 3e+0 34 At4g11420 826746 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. C.G. S.X.
0.01 3e+0 34 At4g28220 828937 NDB1 (NAD(P)H dehydrogenase B1) F:disulfide oxidoreductase activity, NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane;BOFPAM C.G. S.X.
0.01 3e+0 34 At3g27440 822365 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV C.G. S.X.
0.01 3e+0 34 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.34708.1.S1_at AW432246 - - 2e-1 At5g53250 AGP22 (ARABINOGALACTAN PROTEIN 22) C.G. S.X.
0.03 9e-2 38 Hordeum vulgare Contig20253_at Contig20253 - - 3e-2 At1g47670 amino acid transporter family protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os12g0599700 AK108003.1 - Hypothetical protein 3e-1 At3g45200 unknown protein C.G. S.X.
0.04 4e-3 44 Populus trichocarpa PtpAffx.1235.1.A1_at CV237981 lysine/histidine transporter /// lysine/histidine transporter - 6e-2 At5g28310 oxidoreductase-related C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.10486.2.S1_a_at CA619899 - - 3e-1 At5g25810 tny (TINY) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1621867_at CF516530 - - 5e-2 At5g66000 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.16524.4.A1_at AY107003.1 - - 4e-1 At2g40380 PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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