CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35110

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At4g35110 829663 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA S.X. H.G.
0.38 46.7 At3g14050 820619 RSH2 (RELA-SPOT HOMOLOG 2) F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAV S.X. H.G.
0.38 46.7 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. S.X. H.G.
0.33 38.1 At4g20830 827831 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall;FBPOAM S.X. H.G.
0.32 35.7 At4g30210 829144 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. S.X. H.G.
0.30 32.1 At5g18490 831967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO S.X. H.G.
0.29 30.3 At5g26030 832672 FC1 (ferrochelatase 1) encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins S.X. H.G.
0.29 30.3 At1g63720 842676 - F:unknown;P:unknown;C:unknown;MPFOVB S.X. H.G.
0.29 30.3 At4g17230 827435 SCL13 (Scarecrow-like 13) Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. S.X. H.G.
0.28 30.3 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
106.7 99.9 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
89.5 99.9 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
75.2 99.9 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
66.2 99.8 E-MEXP-1443-raw-cel-1581869573
59.6 99.8 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
45.5 99.8 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
35.5 99.7 E-NASC-76-raw-cel-1359879106
35.4 99.7 E-MEXP-1443-raw-cel-1581869921
34.9 99.7 GSM131609 ATGE_43_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
34.6 99.7 GSM131611 ATGE_43_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 2e-28 127 At2g16900 816192 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA C.G. S.X.
0.02 4e-2 40 At3g06130 819786 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA C.G. S.X.
0.01 1e-1 38 At5g58850 836002 MYB119 (MYB DOMAIN PROTEIN 119) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119). C.G. S.X.
0.01 1e-1 38 At2g47620 819375 ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Glycine max Gma.12767.1.A1_at CD397091 - - 7e-1 At2g28020 - C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig361_s_at Contig361 - - 9e-8 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os04g0652900 AK071125.1 - Protein of unknown function UPF0099 domaincontaining protein 2e-22 At3g03010 aminoacyl-tRNA hydrolase C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.222203.1.S1_at pmrna39464 hypothetical protein - 3e-2 At4g28840 unknown protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum TaAffx.112817.1.S1_at CA620646 - - 1e+0 At5g59480 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1616721_at CF608439 hypothetical protein LOC100260478 - 1e+0 At5g08150 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.14820.1.S1_at AY106101.1 - - 5e+0 At5g14602 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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