CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g35070

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At4g35070 829659 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPVBFA S.X. H.G.
0.26 24.4 At3g12600 820440 atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16) F:hydrolase activity;P:unknown;C:unknown;BMPOF S.X. H.G.
0.25 22.6 At3g14070 820622 CAX9 (CATION EXCHANGER 9) Involved in cation (K, Na and Mn) homeostasis and transport S.X. H.G.
0.24 20.7 At2g28590 817407 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.23 19.3 At2g17530 816260 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.21 15.8 At1g14530 838015 THH1 (TOM THREE HOMOLOG 1) F:virion binding;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.21 15.8 At5g09790 830839 ATXR5 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. S.X. H.G.
0.20 14.4 At5g04460 830324 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV S.X. H.G.
0.20 14.4 At5g58530 835966 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBF S.X. H.G.
0.20 14.4 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
136.9 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.8 99.9 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
112.7 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.4 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.3 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
100.4 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.0 99.9 E-MEXP-1474-raw-cel-1593932737
87.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-4 46 At5g55020 835593 MYB120 (MYB DOMAIN PROTEIN 120) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120). C.G. S.X.
0.02 4e-4 46 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.04 2e-3 44 At5g61590 836280 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.02 2e-3 44 At1g01260 839545 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB C.G. S.X.
0.02 3e-2 40 At5g42280 834233 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POM C.G. S.X.
0.02 3e-2 40 At4g39840 830143 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA C.G. S.X.
0.03 3e-2 40 At4g05100 825855 AtMYB74 (myb domain protein 74) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max HgAffx.17851.1.S1_at CB278539 - - 1e-1 At4g35070 - C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig23137_at Contig23137 - - 2e-1 At4g35070 - C.G. S.X.
0.04 1e-2 42 Oryza sativa Os11g0125300 9639.m00226 - - 1e-1 At1g67035 unknown protein C.G. S.X.
0.04 9e-3 42 Populus trichocarpa PtpAffx.153622.1.A1_s_at CV249906 hypothetical protein - 1e+0 At5g59990 - C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.92519.2.S1_at BJ255733 - - 2e-2 At4g21030 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1622301_at BQ796244 hypothetical protein LOC100246969 - 3e-1 At3g13500 unknown protein C.G. S.X.
0.03 7e-1 34 Zea mays Zm.7457.1.A1_at BM078465 cold shock protein-1 - 1e+0 At5g40645 nitrate-responsive NOI protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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