Gene omics information

Query gene ID At4g35060
Gene name heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g35060829658heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PS.X.H.G.
0.4050.8At5g04470830326SIM (SIAMESE)Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.S.X.H.G.
0.3439.8At1g62660842563beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMAS.X.H.G.
0.2726.2At1g22550838861proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFS.X.H.G.
0.2522.6At1g04250839568AXR3 (AUXIN RESISTANT 3)Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.S.X.H.G.
0.2522.6At2g40110818600yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
53.799.8GSM131185AtGen_D-18_2-FL_REP2_ATH1GSE5617AtGenExpress: Light treatments
46.499.8GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
45.499.8GSM131188AtGen_D-21_2-BL_REP2_ATH1GSE5617AtGenExpress: Light treatments
44.099.8GSM131200AtGen_D-34_3-FL_REP3_ATH1GSE5617AtGenExpress: Light treatments
42.899.8GSM226541L11SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
42.299.8GSM131191AtGen_D-24_2-WL_REP2_ATH1GSE5617AtGenExpress: Light treatments
41.699.8GSM131203AtGen_D-37_3-BL_REP3_ATH1GSE5617AtGenExpress: Light treatments
41.099.8GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
40.999.8GSM131206AtGen_D-40_3-WL_REP3_ATH1GSE5617AtGenExpress: Light treatments
39.699.8GSM131170AtGen_D-2_1-FL_REP1_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.202e-446At4g38580830015ATFP6 (FARNESYLATED PROTEIN 6)putative farnesylated protein (At4g38580) mRNA, completeC.G.S.X.
0.032e-136At5g60800836201heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;POMFBVAC.G.S.X.
0.012e-136At5g04895830371ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid bindingF:double-stranded RNA binding, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:mitochondrion, intracellular;BMOFPVC.G.S.X.
0.012e-136At2g14080815893disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAVC.G.S.X.
0.019e-134At5g49110834970unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVC.G.S.X.
0.019e-134At1g15740838143leucine-rich repeat family proteinF:protein binding;P:unknown;C:cellular_component unknown;MPBOFVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.189e-1167Glycine maxGma.1397.1.S1_a_atCD408242--6e-24At4g38580ATFP6 (FARNESYLATED PROTEIN 6)C.G.S.X.
0.047e+030Hordeum vulgareHVSMEa0011I24r2_atHVSMEa0011I24r2--4e+0At5g48000CYP708A2C.G.S.X.
0.042e+034Oryza sativaOs01g03569509629.m02471--1e+0At4g35060heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.121e-344Populus trichocarpaPtpAffx.26642.1.S1_atCK087286hypothetical protein-4e-13At4g38580ATFP6 (FARNESYLATED PROTEIN 6)C.G.S.X.
0.049e-134Triticum aestivumTaAffx.56436.1.S1_atCA651657--1e+0At4g35060heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.031e+032Vitis vinifera1613192_atCF606292--9e-1At1g76480unknown proteinC.G.S.X.
0.036e+030Zea maysZm.9587.1.A1_atBM339308--5e+0At5g54062unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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