CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34880

Gene name amidase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At4g34880 829640 amidase family protein F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:endomembrane system;BOMFPA S.X. H.G.
0.67 81.6 At1g14390 838001 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.67 81.6 At3g06990 819884 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.27 26.2 At3g50130 824175 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFBVA S.X. H.G.
0.17 10.2 At5g24100 832475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
269.4 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
223.8 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
195.1 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
188.2 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
187.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
182.3 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
169.6 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
159.6 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
158.4 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
157.7 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 8e-13 75 At1g76994 6240513 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.02 7e-1 36 At5g57790 835888 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 7e-1 36 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family C.G. S.X.
0.01 7e-1 36 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. C.G. S.X.
0.01 7e-1 36 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA C.G. S.X.
0.01 3e+0 34 At5g15510 831404 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBV C.G. S.X.
0.01 3e+0 34 At5g10370 830901 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related F:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVA C.G. S.X.
0.01 3e+0 34 At5g22540 832315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 36 Glycine max Gma.8979.1.S1_at BU926820 - - 2e-1 At4g34880 amidase family protein C.G. S.X.
0.05 2e-2 40 Hordeum vulgare Contig14937_at Contig14937 - - 4e-2 At4g34880 amidase family protein C.G. S.X.
0.06 4e-10 67 Oryza sativa Os04g0184100 AK064021.1 - Amidase family protein 3e-10 At4g34880 amidase family protein C.G. S.X.
0.08 2e-2 42 Populus trichocarpa PtpAffx.204288.1.S1_at pmrna8437 hypothetical protein - 1e-2 At4g34880 amidase family protein C.G. S.X.
0.04 2e-1 38 Triticum aestivum Ta.493.1.A1_at BE591459 - - 8e-2 At4g34880 amidase family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1614042_at CF212958 hypothetical protein LOC100242708 - 4e+0 At3g24500 MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C) C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.654.1.A1_at AI715082 - - 1e+1 At5g29210 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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