CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34850

Gene name chalcone and stilbene synthase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
1.00 100.0 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
1.00 100.0 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
1.00 100.0 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
1.00 100.0 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
1.00 100.0 At4g35420 829695 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
0.94 96.7 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV S.X. H.G.
0.94 96.7 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
0.94 96.7 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
0.94 96.7 At1g01280 839470 CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2) member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis). S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
313.9 100.0 E-MEXP-1592-raw-cel-1617526952
284.2 100.0 E-MEXP-1592-raw-cel-1617526856
283.8 100.0 E-MEXP-1592-raw-cel-1617526920
265.9 100.0 E-MEXP-1592-raw-cel-1617526984
246.5 100.0 E-MEXP-1592-raw-cel-1617526816
244.1 100.0 E-MEXP-1592-raw-cel-1617526824
195.9 100.0 E-MEXP-1592-raw-cel-1617526888
195.5 100.0 E-MEXP-1592-raw-cel-1617526848
182.7 100.0 E-MEXP-1592-raw-cel-1617526912
162.0 99.9 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 4e-5 50 At4g00040 828224 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF C.G. S.X.
0.10 9e-3 42 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF C.G. S.X.
0.01 6e-1 36 At5g22060 832267 ATJ2 Co-chaperonin similar to E. coli DnaJ C.G. S.X.
0.01 6e-1 36 At3g44110 823531 ATJ3 homologous to the co-chaperon DNAJ protein from E coli C.G. S.X.
0.01 6e-1 36 At1g34355 840337 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV C.G. S.X.
0.01 2e+0 34 At5g10600 830925 CYP81K2 member of CYP81K C.G. S.X.
0.01 2e+0 34 At5g10610 830926 CYP81K1 member of CYP81K C.G. S.X.
0.02 2e+0 34 At4g39190 830074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.92897.1.S1_s_at CF808622 - - 5e-31 At3g23490 CYN (CYANASE) C.G. S.X.
0.04 1e+0 34 Hordeum vulgare Contig19099_at Contig19099 - - 4e-4 At4g00040 chalcone and stilbene synthase family protein C.G. S.X.
0.04 8e-8 59 Oryza sativa Os07g0411300 9635.m02165 - Type III polyketide synthase family protein 3e+0 At4g00040 chalcone and stilbene synthase family protein C.G. S.X.
0.59 2e-26 121 Populus trichocarpa PtpAffx.204552.1.S1_at pmrna8943 chs-like protein - 1e-26 At4g34850 chalcone and stilbene synthase family protein C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.91563.1.S1_at BJ312845 - - 7e-2 At4g34850 chalcone and stilbene synthase family protein C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1610419_at CF405660 hypothetical protein LOC100258437 - 2e-12 At3g51520 diacylglycerol acyltransferase family C.G. S.X.
0.09 1e-3 44 Zea mays Zm.3804.1.S1_at AW061673 chalcone synthase G - 3e-3 At4g34850 chalcone and stilbene synthase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
C GO:0009699 The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00061 Flavonoids biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage