CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34770

Gene name auxin-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At4g34770 829629 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.75 86.9 At3g59900 825160 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth. S.X. H.G.
0.44 57.2 At2g18010 816313 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.40 50.8 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 S.X. H.G.
0.25 22.6 At5g57760 835884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
182.0 100.0 E-MEXP-715-raw-cel-1121836087
137.9 99.9 E-MEXP-715-raw-cel-1121835979
137.2 99.9 E-MEXP-715-raw-cel-1121836113
126.2 99.9 E-MEXP-715-raw-cel-1121836005
106.2 99.9 E-MEXP-715-raw-cel-1121836361
96.9 99.9 Millenaar_A2_ETH_Rep2_ATH1
94.5 99.9 E-MEXP-715-raw-cel-1121836247
74.1 99.9 Millenaar_A2_ETH_Rep1_ATH1
65.0 99.8 GSM9607 iaa17-6_+IAA_3 GSE629 Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
64.6 99.8 Millenaar_A5_ETH_Rep3_ATH1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 6e-4 44 At4g34780 829630 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO C.G. S.X.
0.10 1e-2 40 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO C.G. S.X.
0.07 1e-2 40 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO C.G. S.X.
0.10 1e-2 40 At2g21200 816657 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO C.G. S.X.
0.06 1e-1 36 At2g21220 816659 auxin-responsive protein, putative F:calmodulin binding;P:response to auxin stimulus;C:unknown;PO C.G. S.X.
0.01 6e-1 34 At4g28600 828978 NPGR2 (no pollen germination related 2) encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. C.G. S.X.
0.02 6e-1 34 At3g11560 820329 unknown protein F:unknown;P:unknown;C:chloroplast, chloroplast envelope;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-2 40 Glycine max GmaAffx.60410.1.S1_at BQ080105 - - 2e-11 At4g38825 - C.G. S.X.
0.04 2e-2 38 Hordeum vulgare Contig24178_at Contig24178 - - 7e-2 At4g34770 auxin-responsive family protein C.G. S.X.
0.03 5e+0 32 Oryza sativa OsAffx.32259.1.A1_at - - - 0 C.G. S.X.
0.19 5e-2 38 Populus trichocarpa PtpAffx.204272.1.S1_s_at pmrna8404 SAUR family protein /// SAUR family protein - 6e-3 At4g13790 auxin-responsive protein, putative C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.78369.1.S1_at CA733501 - - 3e+0 At1g24030 protein kinase family protein C.G. S.X.
0.10 7e-4 42 Vitis vinifera 1606566_at CF211641 hypothetical protein LOC100252008 - 1e-12 At4g38840 auxin-responsive protein, putative C.G. S.X.
0.03 1e+0 32 Zea mays ZmAffx.1466.1.S1_at 11990232-33 - - 4e-16 Atcg00530 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage