CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34670

Gene name 40S ribosomal protein S3A (RPS3aB)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.83 91.4 At4g34670 829619 40S ribosomal protein S3A (RPS3aB) F:structural constituent of ribosome;P:translation;C:in 6 components;MOAPFB S.X. H.G.
0.89 94.6 At2g34480 818011 60S ribosomal protein L18A (RPL18aB) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP S.X. H.G.
0.85 92.4 At5g16130 831470 40S ribosomal protein S7 (RPS7C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane;MPOF S.X. H.G.
0.85 92.4 At5g27850 832848 60S ribosomal protein L18 (RPL18C) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane;MOFPA S.X. H.G.
0.85 92.4 At3g62870 825462 60S ribosomal protein L7A (RPL7aB) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAP S.X. H.G.
0.85 92.4 At2g27530 817299 PGY1 (PIGGYBACK1) Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. S.X. H.G.
0.84 91.9 At2g36160 818188 40S ribosomal protein S14 (RPS14A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane;BOPMAF S.X. H.G.
0.84 91.9 At1g22780 838884 PFL (POINTED FIRST LEAVES) S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. S.X. H.G.
0.84 91.9 At3g04840 819644 40S ribosomal protein S3A (RPS3aA) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast;MOAPFB S.X. H.G.
0.84 91.9 At4g17390 827451 60S ribosomal protein L15 (RPL15B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, membrane;MAOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 99.0 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
8.1 98.9 GSM245924 csn4-1_mutant_dark replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
7.7 98.9 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
7.5 98.8 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
7.1 98.8 GSM142600 BD001_ATH1_A4-DAVIE-T13 GSE6149 Targets of the mci genes.
7.0 98.7 GSM139880 eif3h_non-polysome_rep1 GSE6024 eif3h/WT polysome loading
7.0 98.7 GSM133316 RIKEN-LI3B GSE5701 AtGenExpress: Basic hormone treatment of seeds
6.9 98.7 GSM245920 csn3-1 mutant dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
6.9 98.7 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
6.7 98.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 642 At3g04840 819644 40S ribosomal protein S3A (RPS3aA) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast;MOAPFB C.G. S.X.
0.01 4e-1 36 At2g34210 817982 structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV C.G. S.X.
0.03 2e+0 34 At5g19250 832045 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P C.G. S.X.
0.02 2e+0 34 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. C.G. S.X.
0.01 2e+0 34 At3g48610 824021 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:unknown;C:endomembrane system;BFPOA C.G. S.X.
0.01 2e+0 34 At2g35160 818083 SUVH5 (SU(VAR)3-9 HOMOLOG 5) Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain. C.G. S.X.
0.02 2e+0 34 At1g06030 837112 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMF C.G. S.X.
0.03 2e+0 34 At1g50390 841461 fructokinase-related F:molecular_function unknown;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:cellular_component unknown;BOPAFM C.G. S.X.
0.03 2e+0 34 At1g31200 840008 ATPP2-A9 (Phloem protein 2-A9) F:carbohydrate binding;P:unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 5e-35 149 Glycine max GmaAffx.93249.1.S1_at CF807720 - - 5e-35 At4g34670 40S ribosomal protein S3A (RPS3aB) C.G. S.X.
0.48 2e-32 139 Hordeum vulgare Contig429_s_at Contig429 - - 6e-32 At4g34670 40S ribosomal protein S3A (RPS3aB) C.G. S.X.
0.42 2e-13 77 Oryza sativa Os12g0406200 AK071037.1 - 40S ribosomal protein S3a (CYC07 protein) 2e-13 At4g34670 40S ribosomal protein S3A (RPS3aB) C.G. S.X.
0.60 1e-44 180 Populus trichocarpa PtpAffx.6114.1.S1_at CX183665 - - 1e-44 At4g34670 40S ribosomal protein S3A (RPS3aB) C.G. S.X.
0.37 4e-29 129 Triticum aestivum Ta.27448.1.S1_s_at AF542188.1 cyc07 - 5e-29 At4g34670 40S ribosomal protein S3A (RPS3aB) C.G. S.X.
0.26 5e-50 196 Vitis vinifera 1613860_s_at CF512506 cyc07 - 6e-38 At3g04840 40S ribosomal protein S3A (RPS3aA) C.G. S.X.
0.46 3e-21 101 Zea mays Zm.4824.1.A1_x_at CD446403 hypothetical protein LOC100273118 - 5e-23 At3g04840 40S ribosomal protein S3A (RPS3aA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03010 Ribosome
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