CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34580

Gene name COW1 (CAN OF WORMS1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. S.X. H.G.
0.40 50.8 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. S.X. H.G.
0.40 50.8 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.33 38.1 At1g34510 840353 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.21 15.8 At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
310.5 100.0 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
248.0 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
224.7 100.0 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
159.7 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
108.2 99.9 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
100.2 99.9 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
90.3 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
74.3 99.9 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
72.1 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
71.7 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 7e-134 478 At2g16380 816135 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.37 9e-78 291 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
0.39 3e-59 230 At2g21540 816693 SFH3 (SEC14-LIKE 3) F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFO C.G. S.X.
0.31 1e-42 174 At2g18180 816331 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.33 2e-32 141 At4g36490 829801 SFH12 (SEC14-LIKE 12) F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.13 3e-25 117 At2g21520 816691 transporter F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 8e-42 173 Glycine max GmaAffx.89158.1.A1_at CK605958 - - 4e-44 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
0.05 1e-7 57 Hordeum vulgare Contig6304_at Contig6304 - - 2e-1 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
0.16 5e-10 67 Oryza sativa Os02g0440900 9630.m02277 - Phosphatidylinositol transfer-like protein II 3e-28 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.33 1e-46 188 Populus trichocarpa PtpAffx.204603.1.S1_at pmrna9040 hypothetical protein - 4e-49 At4g36490 SFH12 (SEC14-LIKE 12) C.G. S.X.
0.07 2e-4 48 Triticum aestivum Ta.9791.2.S1_at BJ312711 - - 2e-2 At3g24840 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.16 2e-5 50 Vitis vinifera 1612370_at CB974818 hypothetical protein LOC100252199 - 1e-46 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.10 9e-5 48 Zea mays Zm.8497.1.A1_at CF631368 hypothetical protein LOC100274573 - 3e-4 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048768 Localized growth of a plant root hair tip by extension of the cell wall.
X GO:0009932 Growth that occurs specifically at the tip of a cell.
X GO:0010053 The process whereby a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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