CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34510

Gene name KCS17 (3-KETOACYL-COA SYNTHASE 17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g34510 829602 KCS17 (3-KETOACYL-COA SYNTHASE 17) Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.61 76.7 At4g16730 827376 lyase/ magnesium ion binding F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB S.X. H.G.
0.38 46.7 At3g06490 819827 MYB108 (myb domain protein 108) putative transcription factor MYB108 (MYB108) mRNA, S.X. H.G.
0.33 38.1 At3g11430 820316 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5) Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester. S.X. H.G.
0.33 38.1 At3g57510 824918 ADPG1 Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1085.7 100.0 GSM106915 opr3_JA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
858.8 100.0 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
833.3 100.0 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
619.3 100.0 GSM106973 ws_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
266.0 100.0 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
247.4 100.0 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
239.6 100.0 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
93.2 99.9 E-ATMX-1-raw-cel-1112746154
73.7 99.9 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
62.5 99.8 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 0 640 At2g16280 816124 KCS9 (3-KETOACYL-COA SYNTHASE 9) Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.35 2e-47 190 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.32 3e-43 176 At1g19440 838528 KCS4 (3-KETOACYL-COA SYNTHASE 4) Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.26 2e-22 107 At2g15090 815998 KCS8 (3-KETOACYL-COA SYNTHASE 8) Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.17 2e-22 107 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.22 4e-21 103 At4g34250 829574 KCS16 (3-KETOACYL-COA SYNTHASE 16) Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.14 1e-17 91 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.11 3e-12 73 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. C.G. S.X.
0.09 8e-10 65 At1g25450 839131 KCS5 (3-KETOACYL-COA SYNTHASE 5) Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-27 125 Glycine max Gma.2319.2.S1_at BG653402 - - 9e-37 At1g19440 KCS4 (3-KETOACYL-COA SYNTHASE 4) C.G. S.X.
0.05 9e-2 38 Hordeum vulgare Contig5663_at Contig5663 - - 7e-11 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.04 4e-4 48 Oryza sativa Os.25370.1.S1_at - - - 0 C.G. S.X.
0.45 8e-57 222 Populus trichocarpa PtpAffx.224411.1.S1_x_at pmrna42910 hypothetical protein - 2e-124 At2g16280 KCS9 (3-KETOACYL-COA SYNTHASE 9) C.G. S.X.
0.04 5e-2 40 Triticum aestivum Ta.7498.2.A1_a_at CA593590 - - 6e-11 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.10 6e-11 67 Vitis vinifera 1615413_at CB972695 hypothetical protein LOC100260817 - 9e-14 At1g19440 KCS4 (3-KETOACYL-COA SYNTHASE 4) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.8766.1.A1_at BM349453 - - 1e+0 At5g58360 ATOFP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0000038 The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater.
X GO:0030497 The elongation of a fatty acid chain by the sequential addition of two-carbon units.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00040 Fatty acid elongation and wax biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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