Gene omics information

Query gene ID At4g34460
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At4g34460829597AGB1 (GTP BINDING PROTEIN BETA 1)Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseS.X.H.G.
0.5065.3At1g63830842686proline-rich family proteinF:unknown;P:unknown;C:plasma membrane, membrane;POMFBS.X.H.G.
0.4659.8At4g35310829685CPK5 (calmodulin-domain protein kinase 5)calmodulin-domain protein kinase CDPK isoform 5 (CPK5)S.X.H.G.
0.4355.3At3g29400822601ATEXO70E1 (exocyst subunit EXO70 family protein E1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.4253.9At1g64280842733NPR1 (NONEXPRESSER OF PR GENES 1)This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.S.X.H.G.
0.3643.6At3g47550823909zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to salt stress;C:unknown;MPOFVS.X.H.G.
0.3235.7At2g33110817873ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)member of VAMP72 Gene FamilyS.X.H.G.
0.3133.8At3g17410821005serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.599.4GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
14.399.4GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
12.999.3GSM131132AtGen_B-18_2-4-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
12.799.3GSM131148AtGen_B-34_3-6-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
12.599.3GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutants
12.099.3GSM322555genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
12.099.3GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.026e-136At1g06910837201TRFL7 (TRF-LIKE 7)Arabidopsis thaliana myb family transcription factor (At1g06910)C.G.S.X.
0.012e+034At5g18750831993DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVC.G.S.X.
0.012e+034At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.C.G.S.X.
0.022e+034At1g75760843909ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFC.G.S.X.
0.012e+034At1g75200843857flavodoxin family protein / radical SAM domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MBOFPAC.G.S.X.
0.029e+032At5g27945832862transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:anaphase-promoting complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.233e-37157Glycine maxGmaAffx.73239.1.S1_atBF325442--9e-38At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)C.G.S.X.
0.141e-1583Hordeum vulgareContig10968_atContig10968--4e-15At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)C.G.S.X.
0.263e-1067Oryza sativaOs03g0669200AU030384-G protein beta subunit1e+0At2g05270unknown proteinC.G.S.X.
0.364e-52206Populus trichocarpaPtpAffx.13213.1.A1_atCV280406hypothetical protein-5e-52At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)C.G.S.X.
0.161e-20101Triticum aestivumTa.14351.1.S1_atAB090160.1G protein beta subunit-2e-20At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)C.G.S.X.
0.136e-32137Vitis vinifera1608155_atCF210980hypothetical protein LOC100252195-1e-31At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)C.G.S.X.
0.171e-963Zea maysZm.56.1.S1_atU12233.1GTP binding protein2-4e-9At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009817A response of an organism to a fungus that prevents the occurrence or spread of disease.
XGO:0009845The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
XGO:0048527The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
XGO:0009723A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
XGO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
XGO:0030968The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation.
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0006800The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
XGO:0009867A series of molecular signals mediated by jasmonic acid.
XGO:0009887Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
XGO:0010154The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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